Factsheet for Solyc11g008680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
unclear: 26455813

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041874	Potato	plastid	98.22	98.22
Solyc03g063110.2.1	Tomato	plastid	84.22	84.22
VIT_00s0499g00030.t01	Wine grape	plastid	81.42	81.42
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	33.59	80.49
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	31.55	78.48
Solyc06g053480.2.1	Tomato	plastid	76.59	75.82
Zm00001d004019_P001	Maize	plastid	75.06	75.26
EES10606	Sorghum	plastid	74.81	75.0
Os04t0379900-01	Rice	plastid	74.3	74.87
TraesCS3B01G463000.1	Wheat	plastid	74.3	74.3
Zm00001d025170_P001	Maize	plastid	74.05	74.23
TraesCS3D01G421700.1	Wheat	plastid	74.05	74.23
Os01t0919900-01	Rice	plastid	74.81	73.5
GSMUA_Achr7P22860_001	Banana	plastid	67.43	73.41
Zm00001d012033_P002	Maize	mitochondrion	73.03	73.21
TraesCS2A01G280700.2	Wheat	plastid	73.03	73.21
TraesCS2D01G279500.2	Wheat	golgi, plastid	72.77	72.96
TraesCS2B01G298000.1	Wheat	plastid	72.77	72.96
EES04113	Sorghum	plastid	73.28	72.54
GSMUA_Achr8P08750_001	Banana	plastid	64.89	72.24
Zm00001d042344_P002	Maize	plastid	74.3	70.87
TraesCS5A01G123600.2	Wheat	plastid	67.18	68.57
HORVU5Hr1G039730.1	Barley	plastid	67.18	68.57
TraesCS5D01G131500.1	Wheat	plastid	66.41	68.32
TraesCS5B01G123200.1	Wheat	plastid	66.92	68.31
Solyc06g059700.2.1	Tomato	cytosol	23.92	66.2
TraesCS5D01G548700.1	Wheat	plastid	65.65	65.98
TraesCS5B01G539600.1	Wheat	plastid	65.14	65.47
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	73.28	64.72
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	65.65	64.66
Solyc01g009960.2.1	Tomato	plastid	49.36	64.45
TraesCS4A01G326700.1	Wheat	plastid	65.9	63.33
GSMUA_Achr5P25160_001	Banana	plastid	63.36	63.2
Solyc06g034170.1.1	Tomato	peroxisome, plastid	17.3	62.96
HORVU3Hr1G094050.3	Barley	plastid	74.3	62.8
KXG30261	Sorghum	plastid	65.9	62.26
Solyc06g054670.1.1	Tomato	plastid	58.78	60.95
Os02t0504800-01	Rice	plastid	49.36	60.25
TraesCS3A01G426800.3	Wheat	plastid	72.26	58.92
Zm00001d050552_P001	Maize	plastid	65.65	58.64
Solyc06g059720.2.1	Tomato	plastid	55.98	56.85
Solyc06g059710.2.1	Tomato	plastid	55.47	56.33

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	UniProt:K4D5C8	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574
PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:Solyc11g008680.1	EnsemblPlants:Solyc11g008680.1.1
UniParc:UPI000276AA56	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:K4D5C8]

Coordinates

chr11:+:2859715..2863853

Molecular Weight (calculated)

44536.5 Da

IEP (calculated)

6.681

GRAVY (calculated)

-0.378

Length

393 amino acids

Sequence
(BLAST)

001: MALNVNGVSL KSHKMLPLPC SSARSLRVMM ASTIHRPSVE VGSVKKAFTP PREVHVQVTH SMPPEKIEVF DSLRDWAAQN LLVNLKPVEK CWQPTDFLPD
101: PASDGFDEQV KELRERCKEI PDDYFVVLIG DMITEEALPT YQTMINTLDG VRDETGASLS PWAIWTRAWT AEENRHGDLL NKYLYLSGRV DMKQIEKTIQ
201: YLIGSGMDPR TENNPYLGFV YTSFQERATF VSHGNTARLA KEHGDMKLAQ ICGSIAADEK RHETAYTKIV EKLLEVDPDG AILAIGDMMR KKISMPAHLM
301: YDGRDDNLFE HFSAVAQRLG VYTAKDYADI LEFLVGRWEV EKLTGLSSEG RRAQDYVCGL APRIRKLEER AQARAKQRSP VPFSWIFGKE IKI

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.