Factsheet for VIT_00s0499g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	36.13	86.59
VIT_05s0094g00750.t01	Wine grape	plastid	69.47	84.52
PGSC0003DMT400002555	Potato	plastid	84.22	84.22
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	33.84	84.18
Solyc03g063110.2.1	Tomato	plastid	83.46	83.46
PGSC0003DMT400041874	Potato	plastid	82.19	82.19
Solyc11g008680.1.1	Tomato	plastid	81.42	81.42
VIT_05s0094g00550.t01	Wine grape	cytosol	53.69	80.84
VIT_05s0094g00730.t01	Wine grape	plastid	73.54	79.83
VIT_02s0012g02500.t01	Wine grape	cytosol	13.74	79.41
VIT_05s0094g00580.t01	Wine grape	plastid	72.26	78.45
GSMUA_Achr7P22860_001	Banana	plastid	72.01	78.39
VIT_12s0034g00180.t01	Wine grape	cytosol	20.87	77.36
Zm00001d012033_P002	Maize	mitochondrion	76.84	77.04
EES04113	Sorghum	plastid	77.61	76.83
Os04t0379900-01	Rice	plastid	76.08	76.67
Os01t0919900-01	Rice	plastid	77.86	76.5
TraesCS3B01G463000.1	Wheat	plastid	76.34	76.34
TraesCS3D01G421700.1	Wheat	plastid	76.08	76.28
EES10606	Sorghum	plastid	76.08	76.28
GSMUA_Achr8P08750_001	Banana	plastid	68.45	76.2
TraesCS2A01G280700.2	Wheat	plastid	75.32	75.51
Zm00001d004019_P001	Maize	plastid	75.32	75.51
Zm00001d025170_P001	Maize	plastid	75.32	75.51
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	11.7	75.41
TraesCS2B01G298000.1	Wheat	plastid	75.06	75.26
TraesCS2D01G279500.2	Wheat	golgi, plastid	75.06	75.26
Zm00001d042344_P002	Maize	plastid	78.12	74.51
TraesCS5D01G131500.1	Wheat	plastid	68.96	70.94
TraesCS5A01G123600.2	Wheat	plastid	69.21	70.65
TraesCS5B01G123200.1	Wheat	plastid	69.21	70.65
HORVU5Hr1G039730.1	Barley	plastid	69.21	70.65
VIT_05s0094g00740.t01	Wine grape	plastid	64.12	70.59
VIT_12s0034g00190.t01	Wine grape	extracellular	29.26	68.86
TraesCS5D01G548700.1	Wheat	plastid	68.19	68.54
TraesCS5B01G539600.1	Wheat	plastid	67.43	67.77
GSMUA_Achr5P25160_001	Banana	plastid	67.43	67.26
VIT_18s0001g15460.t01	Wine grape	plastid	66.41	67.1
VIT_10s0003g04810.t01	Wine grape	cytosol	20.36	66.67
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	75.32	66.52
TraesCS4A01G326700.1	Wheat	plastid	68.7	66.01
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	66.41	65.41
KXG30261	Sorghum	plastid	68.7	64.9
HORVU3Hr1G094050.3	Barley	plastid	76.59	64.73
VIT_05s0094g00650.t01	Wine grape	plastid	65.39	63.77
Os02t0504800-01	Rice	plastid	51.4	62.73
Zm00001d050552_P001	Maize	plastid	68.45	61.14
TraesCS3A01G426800.3	Wheat	plastid	74.81	61.0
VIT_05s0094g00630.t01	Wine grape	plastid	24.17	56.55
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	34.86	51.31

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:100853715	wikigene:100853715	MapMan:5.1.7.1	ProteinID:CCB45313	ProteinID:CCB45313.1
UniProt:F6GZC7	InterPro:FADS-2_CS	EMBL:FN595016	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	EntrezGene:LOC100853715	wikigene:LOC100853715	PFAM:PF03405	PIRSF:PIRSF000346
ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	TIGR:TC54877
TIGR:TC57391	TIGR:TC61778	TIGR:TC62706	TIGR:TC66363	UniParc:UPI00015CD5EF	ArrayExpress:VIT_00s0499g00030
EnsemblPlantsGene:VIT_00s0499g00030	EnsemblPlants:VIT_00s0499g00030.t01	unigene:Vvi.11293	unigene:Vvi.12510	unigene:Vvi.7161	RefSeq:XP_003635378
RefSeq:XP_003635378.1	SEG:seg	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:F6GZC7]

Coordinates

chrUn:-:30690569..30695674

Molecular Weight (calculated)

44997.1 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.468

Length

393 amino acids

Sequence
(BLAST)

001: MALKLNSAFI CPYHNPRPQS RRPRSHRVFM ASTLRPTSIE VENLKKPFSP PREVHVQVTH SLPPQKIEVF KSMEGWAEKN VLVHLKPVEK CWQPQDFLPD
101: PTSEGFHEQV KELRERAKEL PDDYFVVLVG DMITEEALPT YQTMLNTLDG VRDETGASLT PWAVWTRAWT AEENRHGDLL NKYLYLSGRV DMKQIEKTIQ
201: YLIGSGMDPR TENSPYLGFI YTSFQERATF VSHGNTARLA KEHGDMKLAQ ICGTIAADEK RHETAYTKIV EKLFEIDPDG TVLAFADMMR KKISMPAHLM
301: YDGQDDNLFE HFSAVAQRLG VYTAKDYADI LEFLVGRWNL EKLTGLSGEG RKAQDYVCGL APRIRKLEER AQGRVKQATA VPFSWIFGRK MMV

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.