Factsheet for Solyc06g053920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042064	Potato	plastid	90.96	90.79
HORVU4Hr1G039880.1	Barley	nucleus, plastid	47.2	63.04
Bra023783.1-P	Field mustard	nucleus	53.89	59.36
VIT_05s0020g04440.t01	Wine grape	plastid	60.22	58.32
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	58.23	57.3
TraesCS4A01G149300.1	Wheat	nucleus	53.16	54.04
AT3G55760.1	Thale cress	plastid	56.42	53.98
CDY40826	Canola	mitochondrion, nucleus, plastid	54.97	53.43
GSMUA_Achr1P14060_001	Banana	plastid	55.15	53.23
KRH69067	Soybean	mitochondrion, nucleus	54.97	52.87
Zm00001d052977_P001	Maize	plastid	55.15	52.32
TraesCS4B01G158500.1	Wheat	plastid	55.15	51.17
EES10011	Sorghum	plastid	55.52	50.74
CDY35481	Canola	mitochondrion, nucleus, plastid	45.57	50.6
Os11t0586300-01	Rice	plastid	48.82	50.28
HORVU4Hr1G039870.1	Barley	mitochondrion, nucleus, plastid	55.33	49.2
Solyc12g094570.1.1	Tomato	cytosol	15.73	41.63
Solyc04g082290.2.1	Tomato	plastid	25.86	32.8
Solyc12g094580.1.1	Tomato	nucleus	5.97	16.1

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0030246	GO:GO:0043036	GO:GO:2001070
UniProt:K4C679	PANTHER:PTHR34113	PANTHER:PTHR34113:SF2	EnsemblPlantsGene:Solyc06g053920.2	EnsemblPlants:Solyc06g053920.2.1	UniParc:UPI000276596D
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:36820550..36825358

Molecular Weight (calculated)

63307.8 Da

IEP (calculated)

5.996

GRAVY (calculated)

-1.036

Length

553 amino acids

Sequence
(BLAST)

001: MATRFPATTH SRVVATSSGE PKVEYPFSVS TRKWQVVTQR RRKSSRIKAT DSDSFLEMWK RAMERERKSA EFKRIAENIA PPEVDESPEI LEKKTKEFNK
101: ILQVSPEERD RVQSMQIIDR AAAALAAAKA LIEENPLPRK DDDESDKSKK QGAGNVISIV PRSGTMMGTP GPSFWSWIPP SDSSFDDIQM KSDVSLSPNP
201: PSPVIEKERS PDFLSIPFQS ATIDKKHSPP LPPLQSHLEV ENLEDSSSTP EIPQQVEERE LGILFSANAA EAAHALKQKD EASSEGINPD GSRWWKETGT
301: ERRADGVVCK WTLTRGVSAD KTVEWEDKYW EAADEFGHKE LGSEKSGRDA AGNVWHEFWK ESMWQNGGLV HMEKTADKWG KNDKGEEWHE KWWEHYGAGG
401: QAEKWAHKWC SIDPNTPLDA GHAHVWHERW GEKYDGKGGS IKYTDKWAER FEGDGWSKWG DKWDENFDLN GHGVKQGETW WAGKHGERWN RTWGEGHNGS
501: GWVHKYGKSS DGEHWDTHVN EETWYERFPH FGFYHCFQNS VQLREVKRPS DWP

Best Arabidopsis Sequence Match ( AT3G55760.2 )
(BLAST)

001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS

Arabidopsis Description

At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.