Factsheet for PGSC0003DMT400042064

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053920.2.1	Tomato	nucleus, plastid	90.79	90.96
HORVU4Hr1G039880.1	Barley	nucleus, plastid	46.21	61.84
Bra023783.1-P	Field mustard	nucleus	53.43	58.96
VIT_05s0020g04440.t01	Wine grape	plastid	60.11	58.32
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	58.12	57.3
TraesCS4A01G149300.1	Wheat	nucleus	52.71	53.68
KRH69067	Soybean	mitochondrion, nucleus	55.42	53.39
CDY40826	Canola	mitochondrion, nucleus, plastid	54.51	53.08
AT3G55760.1	Thale cress	plastid	55.23	52.94
GSMUA_Achr1P14060_001	Banana	plastid	54.33	52.53
Zm00001d052977_P001	Maize	plastid	54.33	51.63
TraesCS4B01G158500.1	Wheat	plastid	54.69	50.84
EES10011	Sorghum	plastid	54.51	49.92
CDY35481	Canola	mitochondrion, nucleus, plastid	44.77	49.8
Os11t0586300-01	Rice	plastid	48.19	49.72
HORVU4Hr1G039870.1	Barley	mitochondrion, nucleus, plastid	54.33	48.39
PGSC0003DMT400025823	Potato	plastid	24.55	31.48
PGSC0003DMT400075384	Potato	nucleus	24.19	31.24
PGSC0003DMT400083920	Potato	cytosol	2.17	21.82

Protein Annotations

EntrezGene:102584633	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0030246	GO:GO:0043036
GO:GO:2001070	UniProt:M1BCG0	EnsemblPlantsGene:PGSC0003DMG400016314	PGSC:PGSC0003DMG400016314	EnsemblPlants:PGSC0003DMT400042064	PANTHER:PTHR34113
PANTHER:PTHR34113:SF2	UniParc:UPI00029619B5	RefSeq:XP_006350655.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016314]

Coordinates

chr6:+:40168684..40173521

Molecular Weight (calculated)

63489.9 Da

IEP (calculated)

5.702

GRAVY (calculated)

-1.020

Length

554 amino acids

Sequence
(BLAST)

001: MATRFPATTH SRVVAASSGE PKVEYPFSVS TRKWQVVTER RRKNSRIKAT DSDSFLEMWK RAMERERKSA EFKRIAENIA PPEVEESPEI LEKKTEEFNK
101: ILQVSPEERD KVQSMQIIDR AAAALAAAKA LIKENPLPRK DDDEADKNNK QGATGNVISI VPRSGTMMGT PGPSFWSWTP PSDSSFDDIQ MKSDVSLSPD
201: PPSPVIEKER SPDFLSIPFQ SATIDRKHSP PLPPLQSHLE VENLEDSSST PEIPHQVEER ELGILFSANA AEAAYALHQE NEASSEGISP DGSRWWKETG
301: TERRPDGVVC KWTLTRGISA DKTVEWEDKY WEAADEFGHK ELGSEKSGRD AAGNVWHEFW KESMWQSGGL VHMEKTADKW GRNNKGEEWH EKWWEHYGAG
401: GQAEKWAHKW CSIDPNTPLD AGHAHVWHER WGEKYDGKGG SIKYTDKWAE RFEVDGWSKW GDKWDENFDL NGHGVKQGET WWAGKHGERW NRTWGEGHNG
501: SGWVHKYGKS SDGEHWDTHV NEETWYERFP HFGFFHCFQN SVQLREVKRP SDWP

Best Arabidopsis Sequence Match ( AT3G55760.2 )
(BLAST)

001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS

Arabidopsis Description

At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.