Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g094570.1.1 | Tomato | cytosol | 98.18 | 25.84 |
| Zm00001d027532_P002 | Maize | nucleus | 70.91 | 15.18 |
| PGSC0003DMT400075384 | Potato | nucleus | 98.18 | 12.59 |
| GSMUA_Achr1P02740_001 | Banana | nucleus | 67.27 | 11.25 |
| Os03t0133300-01 | Rice | plastid | 69.09 | 10.89 |
| KRH60951 | Soybean | nucleus | 69.09 | 10.24 |
| PGSC0003DMT400025823 | Potato | plastid | 78.18 | 9.95 |
| Bra039888.1-P | Field mustard | nucleus | 72.73 | 9.73 |
| CDX80743 | Canola | nucleus, plastid | 72.73 | 9.73 |
| CDY48820 | Canola | nucleus | 72.73 | 9.73 |
| AT1G42430.1 | Thale cress | nucleus | 74.55 | 9.62 |
| GSMUA_Achr4P25500_001 | Banana | mitochondrion | 72.73 | 9.57 |
| VIT_18s0001g00110.t01 | Wine grape | nucleus | 74.55 | 9.49 |
| OQU93301 | Sorghum | plastid | 70.91 | 9.09 |
| Zm00001d048349_P002 | Maize | plastid | 70.91 | 9.05 |
| TraesCS4D01G326500.1 | Wheat | plastid | 70.91 | 9.05 |
| TraesCS5A01G501000.1 | Wheat | cytosol, plastid | 70.91 | 9.03 |
| TraesCS4B01G329400.1 | Wheat | plastid | 70.91 | 8.92 |
| KRH51626 | Soybean | nucleus, plastid | 69.09 | 8.46 |
| PGSC0003DMT400042064 | Potato | plastid | 21.82 | 2.17 |
| VIT_03s0038g02700.t01 | Wine grape | cytosol | 3.64 | 1.44 |
| Solyc12g094580.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400083920 | EnsemblPlantsGene:PGSC0003DMG400033656 | PANTHER:PTHR34113 | PANTHER:PTHR34113:SF3 | PGSC:PGSC0003DMG400033656 | UniParc:UPI00029483B3 |
| UniProt:M1D7C5 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400033656]
Coordinates
chr12:+:34418351..34418729
Molecular Weight (calculated)
6044.8 Da
IEP (calculated)
3.509
GRAVY (calculated)
-0.467
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MVVDEKTYYE AEPHYGWADV VGDSSQLFSI QPPGVYPNID FGSSVPPDDE SPPTI
001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKLTGPQSRD
101: TPPKRDTGIA NEKDWGIDLL NENVNEAGTN EDGSSWFRES GHDLGDNGYR CRWSRMGGRS HDGSSEWTET WWEKSDWTGY KELGVEKSGK NSEGDSWWET
201: WQEVLHQDEW SNLARIERSA QKQAKSGTEN AGWYEKWWEK YDAKGWTEKG AHKYGRLNEQ SWWEKWGEHY DGRGSVLKWT DKWAETELGT KWGDKWEEKF
301: FSGIGSRQGE TWHVSPNSDR WSRTWGEEHF GNGKVHKYGK STTGESWDIV VDEETYYEAE PHYGWADVVG DSTQLLSIQP RERPPGVYPN LEFGPSPPPE
401: PDLPPDQPQ
101: TPPKRDTGIA NEKDWGIDLL NENVNEAGTN EDGSSWFRES GHDLGDNGYR CRWSRMGGRS HDGSSEWTET WWEKSDWTGY KELGVEKSGK NSEGDSWWET
201: WQEVLHQDEW SNLARIERSA QKQAKSGTEN AGWYEKWWEK YDAKGWTEKG AHKYGRLNEQ SWWEKWGEHY DGRGSVLKWT DKWAETELGT KWGDKWEEKF
301: FSGIGSRQGE TWHVSPNSDR WSRTWGEEHF GNGKVHKYGK STTGESWDIV VDEETYYEAE PHYGWADVVG DSTQLLSIQP RERPPGVYPN LEFGPSPPPE
401: PDLPPDQPQ
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.