Factsheet for GSMUA_Achr1P02740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027532_P002	Maize	nucleus	68.09	87.16
Solyc12g094570.1.1	Tomato	cytosol	51.06	80.38
Os03t0133300-01	Rice	plastid	84.5	79.66
GSMUA_Achr4P25500_001	Banana	mitochondrion	89.97	70.81
PGSC0003DMT400083920	Potato	cytosol	11.25	67.27
Bra039888.1-P	Field mustard	nucleus	81.46	65.21
CDX80743	Canola	nucleus, plastid	81.46	65.21
CDY48820	Canola	nucleus	81.46	65.21
OQU93301	Sorghum	plastid	84.19	64.57
Zm00001d048349_P002	Maize	plastid	83.59	63.81
TraesCS4D01G326500.1	Wheat	plastid	83.28	63.57
TraesCS5A01G501000.1	Wheat	cytosol, plastid	82.98	63.19
VIT_18s0001g00110.t01	Wine grape	nucleus	82.98	63.19
AT1G42430.1	Thale cress	nucleus	81.76	63.15
TraesCS4B01G329400.1	Wheat	plastid	83.59	62.93
PGSC0003DMT400025823	Potato	plastid	79.64	60.65
PGSC0003DMT400075384	Potato	nucleus	78.72	60.37
KRH51626	Soybean	nucleus, plastid	81.76	59.91
Solyc04g082290.2.1	Tomato	plastid	79.33	59.86
KRH60951	Soybean	nucleus	60.79	53.91
VIT_03s0038g02700.t01	Wine grape	cytosol	17.33	41.01
Solyc12g094580.1.1	Tomato	nucleus	17.63	28.29
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	41.64	24.38
GSMUA_Achr1P14060_001	Banana	plastid	39.21	22.51

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02740_001	EnsemblPlants:GSMUA_Achr1T02740_001	EnsemblPlantsGene:GSMUA_Achr1G02740_001	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	UniParc:UPI00029523AC
UniProt:M0RWI2	MapMan:3.2.3.1.3	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G02740_001]

Coordinates

chr1:+:2228720..2238608

Molecular Weight (calculated)

38231.1 Da

IEP (calculated)

4.626

GRAVY (calculated)

-1.281

Length

329 amino acids

Sequence
(BLAST)

001: MFHHIISLQV EGPAPESRDT PPKRDTGIAS EKEWGINILD EKVSESGTNE DGSTWYRESG EELGDNGYRC RWAKMGGQSH DGSSEWKETW WEKSDWTGYK
101: ELGAEKSGRN AEGDSWWETW KEVLYQDEWS NLARIERSAQ KQAKSGTENA GWYEKWWEKY DAKGWTEKGA HKYGRLNEQS WWEKWGEHYD GRGFVLKWTD
201: KWAETQLGTR WGDKWEEKFF AGIGSRQGET WHVSPAGERW SRTWGEEHFG NGKVHKYGKS TTGESWDIVV DEETYYEGEP HYGWAEVVGD STQLLSIQPQ
301: ERPPGVYPNL DFGASERQKD DPPDEPLQQ

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.