Factsheet for VIT_18s0001g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027532_P002	Maize	nucleus	50.23	84.44
Solyc12g094570.1.1	Tomato	cytosol	40.28	83.25
GSMUA_Achr1P02740_001	Banana	nucleus	63.19	82.98
Os03t0133300-01	Rice	plastid	65.74	81.38
Bra039888.1-P	Field mustard	nucleus	73.15	76.89
CDY48820	Canola	nucleus	73.15	76.89
CDX80743	Canola	nucleus, plastid	72.92	76.64
PGSC0003DMT400083920	Potato	cytosol	9.49	74.55
PGSC0003DMT400075384	Potato	nucleus	73.38	73.89
GSMUA_Achr4P25500_001	Banana	mitochondrion	69.91	72.25
AT1G42430.1	Thale cress	nucleus	70.83	71.83
PGSC0003DMT400025823	Potato	plastid	71.3	71.3
OQU93301	Sorghum	plastid	70.37	70.86
Solyc04g082290.2.1	Tomato	plastid	71.3	70.64
KRH51626	Soybean	nucleus, plastid	73.38	70.6
Zm00001d048349_P002	Maize	plastid	69.44	69.61
TraesCS4D01G326500.1	Wheat	plastid	68.98	69.14
TraesCS5A01G501000.1	Wheat	cytosol, plastid	68.52	68.52
TraesCS4B01G329400.1	Wheat	plastid	68.75	67.96
KRH60951	Soybean	nucleus	57.64	67.12
Solyc12g094580.1.1	Tomato	nucleus	24.77	52.2
VIT_03s0038g02700.t01	Wine grape	cytosol	13.89	43.17
VIT_05s0020g04440.t01	Wine grape	plastid	33.56	25.39

Protein Annotations

ArrayExpress:VIT_18s0001g00110	EMBL:FN595227	EnsemblPlants:VIT_18s0001g00110.t01	EnsemblPlantsGene:VIT_18s0001g00110	EntrezGene:100252277	EntrezGene:LOC100252277
PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	ProteinID:CCB45384	ProteinID:CCB45384.1	RefSeq:XP_002285931	RefSeq:XP_002285931.1
SEG:seg	TIGR:TC59703	unigene:Vvi.7308	UniParc:UPI00015C826B	UniProt:F6H0B2	wikigene:100252277
wikigene:LOC100252277	MapMan:3.2.3.1.3	:	:	:	:

Description

No Description!

Coordinates

chr18:-:1145341..1156506

Molecular Weight (calculated)

49632.5 Da

IEP (calculated)

5.980

GRAVY (calculated)

-1.163

Length

432 amino acids

Sequence
(BLAST)

001: MAASSRGFAT PFRLELRSVD VSTLPHREIE FRKCRRRVSV DGDRIRLSRI RCCCSGSTGS GKSVEKAEEW RFDSKKSSHR VRIQAMPSMP FASPQSHFVS
101: KQEKFYPRCT PRHSGPQSRD TPPKRDTGIA NEKDWGINLL SENINESGTN EDGSAWYRES GEDLGENGYR CRWTRMGGQS HDGSSEWKEM WWEKSDWTGY
201: KELGVEKSGR NAEGDSWWET WQEVLHQDEW SNLARIERSA QKQAKSGTEN AGWYEKWWEK YDAKGSTEKG AHKYGRLNEQ SWWEKWGEHY DGRGSVLKWT
301: DKWAETELGT KWGDKWEEKF FAGIGSRQGE TWHLSPSGDR WSRTWGEEHF GNGKVHKYGK STTGESWDIV VDEETYYEAE PHYGWADVVG NSSQLLSIEP
401: LERPPGVYPN LDFGTSPPPP DDDSPDTAAS SQ

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.