Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027532_P002 | Maize | nucleus | 68.77 | 93.39 |
| GSMUA_Achr1P02740_001 | Banana | nucleus | 79.66 | 84.5 |
| Solyc12g094570.1.1 | Tomato | cytosol | 47.28 | 78.95 |
| OQU93301 | Sorghum | plastid | 91.69 | 74.59 |
| Zm00001d048349_P002 | Maize | plastid | 91.98 | 74.48 |
| TraesCS5A01G501000.1 | Wheat | cytosol, plastid | 91.12 | 73.61 |
| TraesCS4D01G326500.1 | Wheat | plastid | 90.54 | 73.32 |
| TraesCS4B01G329400.1 | Wheat | plastid | 91.12 | 72.77 |
| GSMUA_Achr4P25500_001 | Banana | mitochondrion | 83.67 | 69.86 |
| PGSC0003DMT400083920 | Potato | cytosol | 10.89 | 69.09 |
| Bra039888.1-P | Field mustard | nucleus | 81.09 | 68.86 |
| CDY48820 | Canola | nucleus | 81.09 | 68.86 |
| CDX80743 | Canola | nucleus, plastid | 81.09 | 68.86 |
| AT1G42430.1 | Thale cress | nucleus | 81.09 | 66.43 |
| VIT_18s0001g00110.t01 | Wine grape | nucleus | 81.38 | 65.74 |
| PGSC0003DMT400025823 | Potato | plastid | 78.8 | 63.66 |
| Solyc04g082290.2.1 | Tomato | plastid | 78.51 | 62.84 |
| PGSC0003DMT400075384 | Potato | nucleus | 76.5 | 62.24 |
| KRH51626 | Soybean | nucleus, plastid | 77.65 | 60.36 |
| KRH60951 | Soybean | nucleus | 59.31 | 55.8 |
| VIT_03s0038g02700.t01 | Wine grape | cytosol | 15.19 | 38.13 |
| Solyc12g094580.1.1 | Tomato | nucleus | 20.63 | 35.12 |
| Os11t0586300-01 | Rice | plastid | 37.25 | 24.21 |
Protein Annotations
| MapMan:3.2.3.1.3 | UniProt:A0A0P0VSN7 | ProteinID:BAS82157.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0030246 | GO:GO:0043036 | GO:GO:2000904 |
| GO:GO:2001070 | EnsemblPlantsGene:Os03g0133300 | EnsemblPlants:Os03t0133300-01 | PANTHER:PTHR34113 | PANTHER:PTHR34113:SF3 | UniParc:UPI0003939AE9 |
| SEG:seg | : | : | : | : | : |
Description
Similar to F7F22.5. (Os03t0133300-01)
Coordinates
chr3:+:1873291..1878362
Molecular Weight (calculated)
40289.6 Da
IEP (calculated)
4.908
GRAVY (calculated)
-1.291
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLPFPSPR SRRQWKQQNF YPRCTPRGPA PQSRDTPPKR DTGIASEKEW GINLLDEAVK ESGTNEDGST WYRESGDDRG DNGYRCRWAR MGGQSHDGTT
101: EWKETWWEKS DWTGYKELGA EKSGKNGEGD SWWEKWKEVL YQDEWSNLAR IERSAEKQAK SGAENAGWYE KWWEKYDAKG WTEKGAHKYG RLNEQSWWER
201: WGEHYDGRGF VLKWTDKWAE TDLGTKWGDK WEEKFFAGIG SRQGETWHVS PGGDRWSRTW GEEHFGNGKV HKYGKSTTGE SWDLVVDEET YYEAEPHYGW
301: ADVVGDSTQL LSIQPVERPP GVYPTIDFSA SSPAPPSDDP PGMPPSPLE
101: EWKETWWEKS DWTGYKELGA EKSGKNGEGD SWWEKWKEVL YQDEWSNLAR IERSAEKQAK SGAENAGWYE KWWEKYDAKG WTEKGAHKYG RLNEQSWWER
201: WGEHYDGRGF VLKWTDKWAE TDLGTKWGDK WEEKFFAGIG SRQGETWHVS PGGDRWSRTW GEEHFGNGKV HKYGKSTTGE SWDLVVDEET YYEAEPHYGW
301: ADVVGDSTQL LSIQPVERPP GVYPTIDFSA SSPAPPSDDP PGMPPSPLE
001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.