Factsheet for Zm00001d048349_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027532_P002	Maize	nucleus	58.0	97.28
OQU93301	Sorghum	plastid	94.9	95.34
Os03t0133300-01	Rice	plastid	74.48	91.98
GSMUA_Achr1P02740_001	Banana	nucleus	63.81	83.59
TraesCS5A01G501000.1	Wheat	cytosol, plastid	80.97	80.79
TraesCS4D01G326500.1	Wheat	plastid	80.51	80.51
TraesCS4B01G329400.1	Wheat	plastid	81.21	80.09
Solyc12g094570.1.1	Tomato	cytosol	38.52	79.43
GSMUA_Achr4P25500_001	Banana	mitochondrion	72.16	74.4
PGSC0003DMT400083920	Potato	cytosol	9.05	70.91
CDX80743	Canola	nucleus, plastid	67.29	70.56
Bra039888.1-P	Field mustard	nucleus	67.05	70.32
CDY48820	Canola	nucleus	67.05	70.32
VIT_18s0001g00110.t01	Wine grape	nucleus	69.61	69.44
PGSC0003DMT400075384	Potato	nucleus	66.59	66.9
AT1G42430.1	Thale cress	nucleus	65.2	65.96
PGSC0003DMT400025823	Potato	plastid	65.43	65.28
Solyc04g082290.2.1	Tomato	plastid	65.89	65.14
KRH51626	Soybean	nucleus, plastid	67.05	64.37
KRH60951	Soybean	nucleus	52.44	60.92
Solyc12g094580.1.1	Tomato	nucleus	20.19	42.44
VIT_03s0038g02700.t01	Wine grape	cytosol	12.06	37.41
Zm00001d052977_P001	Maize	plastid	31.79	23.5

Protein Annotations

EnsemblPlants:Zm00001d048349_P002	EnsemblPlants:Zm00001d048349_T002	EnsemblPlantsGene:Zm00001d048349	EntrezGene:103639546	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3
ProteinID:AQL09474.1	SEG:seg	UniParc:UPI0004DE8196	UniProt:A0A1D6PJJ7	MapMan:3.2.3.1.3	:

Description

No Description!

Coordinates

chr9:+:154838170..154843210

Molecular Weight (calculated)

49012.1 Da

IEP (calculated)

6.218

GRAVY (calculated)

-1.112

Length

431 amino acids

Sequence
(BLAST)

001: MAACSRGLAW PPFDLTTARG AASWPRRRAT IRCCCAGTDP EPRRRLSRAA AAAPERAEEW RVDGNKPSAA APARRRASLT AMPPLPFPAP RSRRQFKQQD
101: FYPRCTPRGP APQSCDSPPK RDTGIASEKE WGINLLDEAV KESGINEDGS TWYRESGEDT GENGYRCRWA RMGGQNHDGS TEWKETWWEK SDWTGYKELG
201: AEKSGKNAEG DSWWEKWKEV LYQDEWSNLA RIEKSAEKQA KSGAENAGWY EKWWEKYDAK GWTEKGAHKY GRLNEQSWWE RWGEHYDGRG FVLKWTDKWA
301: ETDLGTKWGD KWEEKFFAGI GSRQGETWHV SPGRERWSRT WGEEHFGNGK VHKYGKSTTG ESWDLVVDEE TYYEAEPHYG WADVVGDSTQ LLSIQPVERP
401: PGVFPAIDFS SAPPPKDAPP GMPPSPLDGG N

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.