CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039888.1-P	Field mustard	nucleus	100.0	100.0
CDX80743	Canola	nucleus, plastid	99.27	99.27
Zm00001d027532_P002	Maize	nucleus	52.31	83.66
AT1G42430.1	Thale cress	nucleus	86.13	83.1
Solyc12g094570.1.1	Tomato	cytosol	42.09	82.78
GSMUA_Achr1P02740_001	Banana	nucleus	65.21	81.46
Os03t0133300-01	Rice	plastid	68.86	81.09
VIT_18s0001g00110.t01	Wine grape	nucleus	76.89	73.15
PGSC0003DMT400083920	Potato	cytosol	9.73	72.73
Solyc04g082290.2.1	Tomato	plastid	74.94	70.64
PGSC0003DMT400075384	Potato	nucleus	73.72	70.63
PGSC0003DMT400025823	Potato	plastid	74.21	70.6
GSMUA_Achr4P25500_001	Banana	mitochondrion	70.8	69.62
KRH51626	Soybean	nucleus, plastid	75.91	69.49
OQU93301	Sorghum	plastid	71.05	68.07
Zm00001d048349_P002	Maize	plastid	70.32	67.05
TraesCS4D01G326500.1	Wheat	plastid	69.83	66.59
TraesCS5A01G501000.1	Wheat	cytosol, plastid	69.34	65.97
KRH60951	Soybean	nucleus	59.37	65.77
TraesCS4B01G329400.1	Wheat	plastid	69.34	65.22
Solyc12g094580.1.1	Tomato	nucleus	22.63	45.37
VIT_03s0038g02700.t01	Wine grape	cytosol	14.11	41.73
CDY40826	Canola	mitochondrion, nucleus, plastid	31.39	22.67
CDY35481	Canola	mitochondrion, nucleus, plastid	24.57	20.28

Protein Annotations

EnsemblPlants:CDY48820	EnsemblPlantsGene:GSBRNA2T00091762001	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	ProteinID:CDY48820	ProteinID:CDY48820.1
SEG:seg	UniParc:UPI000253EB2D	UniProt:A0A078ID41	MapMan:3.2.3.1.3	:	:

Description

BnaA08g29770DBnaA08g29770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID41]

Coordinates

chrLK032794:-:92939..95509

Molecular Weight (calculated)

47468.2 Da

IEP (calculated)

6.050

GRAVY (calculated)

-1.160

Length

411 amino acids

Sequence
(BLAST)

001: MGASSAVSLV RFGVGTSNHE LRLKKWTRRL LWFDTRKRFS CCADMLAPIG QSEERRFEQK TSAHGAGIKP SSSAMPFASP KSRFVSKQEK FYPRCTPRLT
101: GPQSRDTPPK RDTGIANEKD WGIDLLNENV NESGINEDGS TWFRESGQDL GENGYRCRWT RMGGRSHDAS SEWTETWWEK SDWTGYKELG VEKSGKNAEG
201: DSWWETWQEV LHQDEWSNLA RIERSAQKQA KSGTENAGWY EKWWEKYDAK GWTEKGAHKY GRLNEQSWWE KWGEHYDGRG SVLKWTDKWA ETELGTKWGD
301: KWEEKFFSGI GSRQGETWHV SPNSDRWSRT WGEEHFGNGK VHKYGKSTTG ESWDIVVDEE TYYEAEPHYG WADVVGDSTQ LLSIQPRERP PGVYPNLEFG
401: PSPPPEPDQP Q

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.