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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • nucleus 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400025823 Potato plastid 92.89 93.75
Solyc12g094570.1.1 Tomato cytosol 40.14 83.73
Zm00001d027532_P002 Maize nucleus 48.85 82.88
GSMUA_Achr1P02740_001 Banana nucleus 59.86 79.33
Os03t0133300-01 Rice plastid 62.84 78.51
Bra039888.1-P Field mustard nucleus 70.64 74.94
CDY48820 Canola nucleus 70.64 74.94
CDX80743 Canola nucleus, plastid 70.41 74.7
AT1G42430.1 Thale cress nucleus 71.33 73.0
VIT_18s0001g00110.t01 Wine grape nucleus 70.64 71.3
KRH51626 Soybean nucleus, plastid 71.1 69.04
GSMUA_Achr4P25500_001 Banana mitochondrion 65.6 68.42
OQU93301 Sorghum plastid 65.14 66.2
Zm00001d048349_P002 Maize plastid 65.14 65.89
TraesCS4D01G326500.1 Wheat plastid 64.45 65.2
KRH60951 Soybean nucleus 55.28 64.96
TraesCS5A01G501000.1 Wheat cytosol, plastid 63.99 64.58
TraesCS4B01G329400.1 Wheat plastid 63.99 63.84
Solyc12g094580.1.1 Tomato nucleus 23.85 50.73
VIT_03s0038g02700.t01 Wine grape cytosol 12.84 40.29
Solyc06g053920.2.1 Tomato nucleus, plastid 32.8 25.86
Protein Annotations
EnsemblPlants:Solyc04g082290.2.1EnsemblPlantsGene:Solyc04g082290.2PANTHER:PTHR34113PANTHER:PTHR34113:SF3SEG:segUniParc:UPI0002766497
UniProt:K4BVV6MapMan:3.2.3.1.3::::
Description
No Description!
Coordinates
chr4:-:66006260..66011564
Molecular Weight (calculated)
49284.4 Da
IEP (calculated)
5.584
GRAVY (calculated)
-1.008
Length
436 amino acids
Sequence
(BLAST)
001: MAASASSRGF TAPIGAAKLP TVEVFPTLPN GFVEFRRKKR SSTGGFFSIQ CCCSDSVMPI RGGSGSGNGV DKGDDGRFDS KKITANYMRT QASSPMPFAS
101: PQSRFVSKPE KFFSRCTPRS SGPKSRDSPP KRDTGIANEK DWGISMLNDN VNETGVNEDG STWYRESGED LGDNGYRCRW TRMGGQSSDG TLEWKETWWE
201: KSDWTGYKEL GVEKSGKNVE GDAWWETWRE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YENWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR
301: GSVLKWTDKW AETELGTKWG DKWEEKFFAG IGSRQGETWH VSPVGDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE GTYYEAEPHY GWADVVGNSS
401: QLLSIQPRDR PPGVFPSMDF GPSLPPEDEL PPTLSQ
Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)
001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.