CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094570.1.1	Tomato	cytosol	45.82	81.34
Zm00001d027532_P002	Maize	nucleus	50.4	72.76
PGSC0003DMT400083920	Potato	cytosol	10.24	69.09
KRH51626	Soybean	nucleus, plastid	81.4	67.26
GSMUA_Achr1P02740_001	Banana	nucleus	53.91	60.79
CDX80743	Canola	nucleus, plastid	66.04	59.61
Bra039888.1-P	Field mustard	nucleus	65.77	59.37
CDY48820	Canola	nucleus	65.77	59.37
Os03t0133300-01	Rice	plastid	55.8	59.31
VIT_18s0001g00110.t01	Wine grape	nucleus	67.12	57.64
AT1G42430.1	Thale cress	nucleus	65.23	56.81
PGSC0003DMT400075384	Potato	nucleus	64.42	55.71
PGSC0003DMT400025823	Potato	plastid	64.69	55.56
Solyc04g082290.2.1	Tomato	plastid	64.96	55.28
OQU93301	Sorghum	plastid	61.99	53.61
GSMUA_Achr4P25500_001	Banana	mitochondrion	59.57	52.87
Zm00001d048349_P002	Maize	plastid	60.92	52.44
TraesCS4D01G326500.1	Wheat	plastid	58.76	50.58
TraesCS5A01G501000.1	Wheat	cytosol, plastid	58.76	50.46
TraesCS4B01G329400.1	Wheat	plastid	59.03	50.11
VIT_03s0038g02700.t01	Wine grape	cytosol	13.48	35.97
Solyc12g094580.1.1	Tomato	nucleus	13.21	23.9
KRH69067	Soybean	mitochondrion, nucleus	28.57	18.43

Protein Annotations

EMBL:ACUP02002143	EnsemblPlants:KRH60951	EnsemblPlantsGene:GLYMA_04G018400	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	ProteinID:KRH60951
ProteinID:KRH60951.1	SEG:seg	UniParc:UPI0006ED59FF	UniProt:A0A0R0K2I4	MapMan:3.2.3.1.3	:

Description

hypothetical protein

Coordinates

chr4:-:1436020..1443342

Molecular Weight (calculated)

42759.0 Da

IEP (calculated)

7.145

GRAVY (calculated)

-1.148

Length

371 amino acids

Sequence
(BLAST)

001: MAASSRGFST TQFDFKLRVM RLNAALLPKS HVLEFGPRKR RKLCFDSDRV RLGDGAMRCC CSDSVTPIRR TSGPGNGSDK NEEWRFDTKK PPHIHRVRVQ
101: ASPAAMPFAS PPSFLKQEKF FPRCTPRNSG PQSRDTPPKR GVEKSGRNSE GDTWWETWQE NLHQDEWSNI ARIERSAQKQ AKSGTENAGW YEKWWEKYDA
201: KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW AETELGTKWG DKWEERFFKG IGSRHGETWH VSPSSERWSR TWGEEHFGNG KVHKYGNSTT
301: GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIEPRER PPGVFPNLDF GSPPSPEAHD DSPDEDFPSS Q

Best Arabidopsis Sequence Match ( AT1G42430.2 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKLTGPQSRD
101: TPPKRDTGIA NEKDWGIDLL NENVNEAGTN EDGSSWFRES GHDLGDNGYR CRWSRMGGRS HDGSSEWTET WWEKSDWTGY KELGVEKSGK NSEGDSWWET
201: WQEVLHQDEW SNLARIERSA QKQAKSGTEN AGWYEKWWEK YDAKGWTEKG AHKYGRLNEQ SWWEKWGEHY DGRGSVLKWT DKWAETELGT KWGDKWEEKF
301: FSGIGSRQGE TWHVSPNSDR WSRTWGEEHF GNGKVHKYGK STTGESWDIV VDEETYYEAE PHYGWADVVG DSTQLLSIQP RERPPGVYPN LEFGPSPPPE
401: PDLPPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.