Factsheet for PGSC0003DMT400075384

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083920	Potato	cytosol	12.59	98.18
Solyc12g094570.1.1	Tomato	cytosol	46.15	94.74
Solyc12g094580.1.1	Tomato	nucleus	40.79	85.37
Zm00001d027532_P002	Maize	nucleus	48.72	81.32
GSMUA_Achr1P02740_001	Banana	nucleus	60.37	78.72
Os03t0133300-01	Rice	plastid	62.24	76.5
Bra039888.1-P	Field mustard	nucleus	70.63	73.72
CDY48820	Canola	nucleus	70.63	73.72
CDX80743	Canola	nucleus, plastid	70.4	73.48
VIT_18s0001g00110.t01	Wine grape	nucleus	73.89	73.38
PGSC0003DMT400025823	Potato	plastid	73.19	72.69
AT1G42430.1	Thale cress	nucleus	69.23	69.72
KRH51626	Soybean	nucleus, plastid	71.33	68.15
GSMUA_Achr4P25500_001	Banana	mitochondrion	65.27	66.99
OQU93301	Sorghum	plastid	66.67	66.67
Zm00001d048349_P002	Maize	plastid	66.9	66.59
TraesCS4D01G326500.1	Wheat	plastid	65.27	64.97
KRH60951	Soybean	nucleus	55.71	64.42
TraesCS5A01G501000.1	Wheat	cytosol, plastid	64.8	64.35
TraesCS4B01G329400.1	Wheat	plastid	64.8	63.62
VIT_03s0038g02700.t01	Wine grape	cytosol	13.29	41.01
PGSC0003DMT400042064	Potato	plastid	31.24	24.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400075384	EnsemblPlantsGene:PGSC0003DMG400029318	EntrezGene:102580145	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	PGSC:PGSC0003DMG400029318
RefSeq:XP_006342544.1	SEG:seg	UniParc:UPI000294CE81	UniProt:M1CV26	MapMan:3.2.3.1.3	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029318]

Coordinates

chr12:-:57401566..57407286

Molecular Weight (calculated)

48749.7 Da

IEP (calculated)

6.440

GRAVY (calculated)

-1.098

Length

429 amino acids

Sequence
(BLAST)

001: MAAAATAATG SNGLMGPLGG KLKRVDVGIG FVELQRKRRR VFGVKCCCSG SVVPIRGING CVEKCENWRF DSKKSSHSYR VKVQASSSST MPFASPKSRF
101: ASKQEQFFPR CTPRNSGPQS HDSPPKRDTG IANEKEWGID MLNENVNESG TNEDGSTWYR KSGENSGENG YRCRWTKMGG KSHDDASEWK EMWWEKSDWT
201: GYKELGVEKS GRNAEGDSWL ETWQEVLHQD EWSNLARIER SAQKQAKSGT ENAGWYENWS EKYDAKGWTE KGAHKYGRLN EQSWWEKWGE EYDGRGSVLK
301: WTDKWAESEL GTKWGDKWEE KFFAGIGSRQ GETWHASLNS ERWSRTWGEE HFGNGKVHKY GKSTTGESWD MVVDEKTYYE AEPHYGWADV VGDSSQLFSI
401: QPREQPPGVY PNIDFGSSVP PDDESPPTR

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.