Factsheet for VIT_03s0038g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027532_P002	Maize	nucleus	36.69	19.84
GSMUA_Achr1P02740_001	Banana	nucleus	41.01	17.33
Solyc12g094570.1.1	Tomato	cytosol	24.46	16.27
Os03t0133300-01	Rice	plastid	38.13	15.19
Bra039888.1-P	Field mustard	nucleus	41.73	14.11
CDX80743	Canola	nucleus, plastid	41.73	14.11
CDY48820	Canola	nucleus	41.73	14.11
VIT_18s0001g00110.t01	Wine grape	nucleus	43.17	13.89
KRH60951	Soybean	nucleus	35.97	13.48
AT1G42430.1	Thale cress	nucleus	41.01	13.38
PGSC0003DMT400075384	Potato	nucleus	41.01	13.29
GSMUA_Achr4P25500_001	Banana	mitochondrion	39.57	13.16
Solyc04g082290.2.1	Tomato	plastid	40.29	12.84
PGSC0003DMT400025823	Potato	plastid	39.57	12.73
OQU93301	Sorghum	plastid	38.85	12.59
TraesCS5A01G501000.1	Wheat	cytosol, plastid	38.13	12.27
TraesCS4B01G329400.1	Wheat	plastid	38.13	12.13
TraesCS4D01G326500.1	Wheat	plastid	37.41	12.06
Zm00001d048349_P002	Maize	plastid	37.41	12.06
KRH51626	Soybean	nucleus, plastid	38.85	12.03
VIT_05s0020g04440.t01	Wine grape	plastid	25.18	6.13
PGSC0003DMT400083920	Potato	cytosol	1.44	3.64
Solyc12g094580.1.1	Tomato	nucleus	2.88	1.95

Protein Annotations

ArrayExpress:VIT_03s0038g02700	EMBL:FN596508	EnsemblPlants:VIT_03s0038g02700.t01	EnsemblPlantsGene:VIT_03s0038g02700	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	ProteinID:CBI37841	ProteinID:CBI37841.3	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001BE516A	UniProt:D7U522	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3:-:1913089..1913969

Molecular Weight (calculated)

16301.3 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.577

Length

139 amino acids

Sequence
(BLAST)

001: MLPNILNKAG SVFWRVEKSR RNAEEESWLG TWQEVLHQDE WSNLARIERS AQKHAKSGTD NVGWYDKWQG NHSLSHSFIF IRISIHLSNR NLLSLYMIIY
101: AFICFIYVGG SRNRKSYSMK KTHENNKTIE STGNLIQCH

Best Arabidopsis Sequence Match ( AT1G42430.2 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKLTGPQSRD
101: TPPKRDTGIA NEKDWGIDLL NENVNEAGTN EDGSSWFRES GHDLGDNGYR CRWSRMGGRS HDGSSEWTET WWEKSDWTGY KELGVEKSGK NSEGDSWWET
201: WQEVLHQDEW SNLARIERSA QKQAKSGTEN AGWYEKWWEK YDAKGWTEKG AHKYGRLNEQ SWWEKWGEHY DGRGSVLKWT DKWAETELGT KWGDKWEEKF
301: FSGIGSRQGE TWHVSPNSDR WSRTWGEEHF GNGKVHKYGK STTGESWDIV VDEETYYEAE PHYGWADVVG DSTQLLSIQP RERPPGVYPN LEFGPSPPPE
401: PDLPPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.