Factsheet for VIT_05s0020g04440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G039880.1	Barley	nucleus, plastid	45.88	63.28
Solyc06g053920.2.1	Tomato	nucleus, plastid	58.32	60.22
PGSC0003DMT400042064	Potato	plastid	58.32	60.11
Bra023783.1-P	Field mustard	nucleus	52.54	59.76
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	55.87	56.76
GSMUA_Achr1P14060_001	Banana	plastid	56.22	56.02
TraesCS4A01G149300.1	Wheat	nucleus	52.36	54.96
AT3G55760.1	Thale cress	plastid	55.17	54.5
KRH69067	Soybean	mitochondrion, nucleus	54.29	53.91
CDY40826	Canola	mitochondrion, nucleus, plastid	53.24	53.43
TraesCS4B01G158500.1	Wheat	plastid	54.99	52.68
Zm00001d052977_P001	Maize	plastid	53.42	52.32
CDY35481	Canola	mitochondrion, nucleus, plastid	45.01	51.61
HORVU4Hr1G039870.1	Barley	mitochondrion, nucleus, plastid	55.52	50.96
EES10011	Sorghum	plastid	52.89	49.92
Os11t0586300-01	Rice	plastid	46.41	49.35
VIT_18s0001g00110.t01	Wine grape	nucleus	25.39	33.56
VIT_03s0038g02700.t01	Wine grape	cytosol	6.13	25.18

Protein Annotations

EntrezGene:100256346	wikigene:100256346	MapMan:35.2	ProteinID:CCB50479	ProteinID:CCB50479.1	UniProt:F6HDV8
EMBL:FN595749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0030246	GO:GO:0043036	GO:GO:2001070
EntrezGene:LOC100256346	wikigene:LOC100256346	PANTHER:PTHR34113	PANTHER:PTHR34113:SF2	TIGR:TC57662	UniParc:UPI0002107F31
ArrayExpress:VIT_05s0020g04440	EnsemblPlantsGene:VIT_05s0020g04440	EnsemblPlants:VIT_05s0020g04440.t01	RefSeq:XP_002279944	RefSeq:XP_002279944.1	RefSeq:XP_010649976.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:6228775..6235592

Molecular Weight (calculated)

64283.7 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.924

Length

571 amino acids

Sequence
(BLAST)

001: MASHLGASLR ATARSAVPVS HRHKHRVAVT VLVRRSGGRG ASRIRVSDGG DSYLDMWKKA VDQERKGMEF QRIAGNSGGE DDGESAEALE RKSGEFMKIL
101: EVSKEERDKV QRIQVIDRAA AAIAAARAIL QESKSGEQEL GYSRVEGSGS ESGGGMGVQQ GGNGTQNGIL FVPQSRTSVN STPGPDFWSW TPPMDSEGKS
201: DDAGNLQTAR TSSPYLTPAE SLMEKEQSVD FLSIPFESRF SESSHNPPLP PLQSLTEVGT VDVSSSSLEM PSLKKEDELG VLFLGHAAEA VHALDEVDGA
301: LSHGVSPDGS RWWRETGIEQ RPDGVVCRWT LIRGVSADHV VEWEEKFWEA ADKFQYKELG SEKSGRDATG NVWREYWKES MWQDCGLMHM EKTADKWGKN
401: GKGDEWHEKW WEQYDASGKA DKWAHKWCSI DPNTQLEAGH AHVWHERWGE RYDGHGGSMK YTDKWAERCE GDAWTKWGDK WDENFDPNSH GVKQGETWWE
501: GKHGERWNRT WGEGHNGSGW VHKYGKSSSG EHWDTHEEQD TWYERFPHYG FYHCFENSVQ LREVQTPPQL S

Best Arabidopsis Sequence Match ( AT3G55760.2 )
(BLAST)

001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS

Arabidopsis Description

At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.