CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023783.1-P	Field mustard	nucleus	51.65	59.16
HORVU4Hr1G039880.1	Barley	nucleus, plastid	40.35	56.04
PGSC0003DMT400042064	Potato	plastid	53.39	55.42
Solyc06g053920.2.1	Tomato	nucleus, plastid	52.87	54.97
VIT_05s0020g04440.t01	Wine grape	plastid	53.91	54.29
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	53.04	54.27
AT3G55760.1	Thale cress	plastid	53.22	52.94
CDY40826	Canola	mitochondrion, nucleus, plastid	52.0	52.55
CDY35481	Canola	mitochondrion, nucleus, plastid	44.87	51.81
Zm00001d052977_P001	Maize	plastid	50.43	49.74
TraesCS4A01G149300.1	Wheat	nucleus	46.96	49.63
GSMUA_Achr1P14060_001	Banana	plastid	49.39	49.56
TraesCS4B01G158500.1	Wheat	plastid	50.09	48.32
EES10011	Sorghum	plastid	50.26	47.77
Os11t0586300-01	Rice	plastid	43.48	46.55
HORVU4Hr1G039870.1	Barley	mitochondrion, nucleus, plastid	49.91	46.14
KRH51626	Soybean	nucleus, plastid	23.83	30.51
KRH60951	Soybean	nucleus	18.43	28.57

Protein Annotations

EntrezGene:100810326	MapMan:35.2	UniProt:A0A0R0KW93	EMBL:ACUP02000687	EnsemblPlantsGene:GLYMA_02G001900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005982	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0030246	GO:GO:0043036	GO:GO:2001070	EnsemblPlants:KRH69067	ProteinID:KRH69067
ProteinID:KRH69067.1	PANTHER:PTHR34113	PANTHER:PTHR34113:SF2	UniParc:UPI0002337451	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:233013..236563

Molecular Weight (calculated)

65061.9 Da

IEP (calculated)

4.689

GRAVY (calculated)

-0.978

Length

575 amino acids

Sequence
(BLAST)

001: MNLGTCAAGA PYRWVHLLPH EGKRRCASVR VRANASVGGG KGDGETASYL DMWKKAVERE RKSASFNSIA DRVAANTDDN NDDDLEKKTS EFQKLLQVSA
101: EERDRVQRMQ VIDRAAAAIA AARQLLQERS AADSSHHEAT ADERRDESGS GMGVQSEGIR VSESETRGNG VPGPDFWSWT PPVESDVPSD DGSGLQLDTK
201: SSVRPTLPSA VVEKEWTPQF LSIPFESLLS QSERSDTLPP FQSFLEVEEA ETTSDPESLS ESPSLSLSLE EEQIHGESSF DYAAEAAHAL SEANKSSPIG
301: VNPDGSRWWK ETGIERRPDG VICRWTMTRG VSADKAIEWQ EKYWEASDDF GYKELGSEKS GRDANGNIWR EFWRESLCLE NGLMSFEKTA DKWGRNVNGN
401: EWQEKWGERY NAAGQTEKWA HKWCSIDPNT PLEPGHAHVW HERWGGKYDG YGGSIKYTDK WAERFVDGGW DKWGDKWDEN FDPNANGVKQ GESWWEGRHG
501: DRWNRTWGEQ HNGSGWIHKY GQSSSGEHWD THAREDTWYE KFPHYGFFNC FENSVQLREV PKPSEILEIQ QVQEP

Best Arabidopsis Sequence Match ( AT3G55760.2 )
(BLAST)

001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS

Arabidopsis Description

At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.