Factsheet for TraesCS4B01G158500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G149300.1	Wheat	nucleus	86.41	94.67
HORVU4Hr1G039880.1	Barley	nucleus, plastid	64.6	93.0
HORVU4Hr1G039870.1	Barley	mitochondrion, nucleus, plastid	82.21	78.78
Zm00001d052977_P001	Maize	plastid	68.46	69.98
EES10011	Sorghum	plastid	69.8	68.76
Os11t0586300-01	Rice	plastid	61.07	67.78
Bra023783.1-P	Field mustard	nucleus	46.64	55.38
Solyc06g053920.2.1	Tomato	nucleus, plastid	51.17	55.15
VIT_05s0020g04440.t01	Wine grape	plastid	52.68	54.99
PGSC0003DMT400042064	Potato	plastid	50.84	54.69
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	51.01	54.09
GSMUA_Achr1P14060_001	Banana	plastid	51.01	53.05
CDY40826	Canola	mitochondrion, nucleus, plastid	47.82	50.09
KRH69067	Soybean	mitochondrion, nucleus	48.32	50.09
AT3G55760.1	Thale cress	plastid	48.15	49.65
CDY35481	Canola	mitochondrion, nucleus, plastid	40.77	48.8
TraesCS4B01G329400.1	Wheat	plastid	23.66	32.27

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0030246	GO:GO:0043036	GO:GO:2001070
PANTHER:PTHR34113	PANTHER:PTHR34113:SF2	EnsemblPlantsGene:TraesCS4B01G158500	EnsemblPlants:TraesCS4B01G158500.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:307205654..307208772

Molecular Weight (calculated)

66956.9 Da

IEP (calculated)

6.565

GRAVY (calculated)

-1.024

Length

596 amino acids

Sequence
(BLAST)

001: MATNSAPIIP AAPHLHRLRG RLLLPHARHR AGQRVVVVRA VSGDGGRGGG PSYLDMWKKA VDRERRSAEL AYRLQASPPP AKAEAPQQAD VERRTARFEE
101: MLRVPREERD RVQRTQVIDR AAAALAAARA VLKEPPQSSP PPPPQPQKPA AATGVIGSGD VFGSRKAAKG PEDQGSGQRS VPVASQSAKV TNSGDSYPSK
201: LGTPGPDFWS WLPPVDTSSE PRENNIVLKP SKKVDSFSGQ PEMLMEKERS ADFLSLPFVT SFFENKEDRS LPPFQSFAEP ENVDSEAKPV ADAEEAFETQ
301: FSNNAAEAAR ALSTSDDKSS HGIDPDGSKW WKETGVEQRP DGVVCKWTVI RGVSADGSVE FEDKYWEASD RFDHKELGSE KSGRDARGNV WREYWKESMW
401: QDFTSGLMHM EKSADKWGKN GKGEQWQEKW WEQYDSSGKA EKTADKWCSL DPNTPLDVGH AHVWHERWGE TYDGSGGSVK YTDKWAERSE GDGWSKWGDK
501: WDEHFDPNGH GVKQGETWWE GKYGDRWNRT WGEGHNGSGW VHKYGRSSSG EHWDTHEPQE TWYERYPHFG FHHCFENSVQ LLSVPRQPPK NFKPGK

Best Arabidopsis Sequence Match ( AT3G55760.2 )
(BLAST)

001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS

Arabidopsis Description

At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.