Factsheet for TraesCS4B01G329400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G501000.1	Wheat	cytosol, plastid	97.03	98.15
TraesCS4D01G326500.1	Wheat	plastid	91.53	92.81
Zm00001d027532_P002	Maize	nucleus	53.78	91.44
Os03t0133300-01	Rice	plastid	72.77	91.12
GSMUA_Achr1P02740_001	Banana	nucleus	62.93	83.59
OQU93301	Sorghum	plastid	80.09	81.59
Zm00001d048349_P002	Maize	plastid	80.09	81.21
Solyc12g094570.1.1	Tomato	cytosol	37.99	79.43
GSMUA_Achr4P25500_001	Banana	mitochondrion	70.48	73.68
PGSC0003DMT400083920	Potato	cytosol	8.92	70.91
CDX80743	Canola	nucleus, plastid	65.68	69.83
Bra039888.1-P	Field mustard	nucleus	65.22	69.34
CDY48820	Canola	nucleus	65.22	69.34
VIT_18s0001g00110.t01	Wine grape	nucleus	67.96	68.75
AT1G42430.1	Thale cress	nucleus	64.99	66.67
PGSC0003DMT400075384	Potato	nucleus	63.62	64.8
KRH51626	Soybean	nucleus, plastid	66.36	64.59
PGSC0003DMT400025823	Potato	plastid	63.84	64.58
Solyc04g082290.2.1	Tomato	plastid	63.84	63.99
KRH60951	Soybean	nucleus	50.11	59.03
Solyc12g094580.1.1	Tomato	nucleus	18.31	39.02
VIT_03s0038g02700.t01	Wine grape	cytosol	12.13	38.13
TraesCS4B01G158500.1	Wheat	plastid	32.27	23.66

Protein Annotations

EnsemblPlants:TraesCS4B01G329400.1	EnsemblPlantsGene:TraesCS4B01G329400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0030246	GO:GO:0043036	GO:GO:2000904	GO:GO:2001070
PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	SEG:seg	MapMan:3.2.3.1.3	:	:

Description

No Description!

Coordinates

chr4B:+:620050430..620054971

Molecular Weight (calculated)

49200.5 Da

IEP (calculated)

7.002

GRAVY (calculated)

-1.060

Length

437 amino acids

Sequence
(BLAST)

001: MAVCSGGLVA PPFDLAASRP GKLGAGPWPR PARGPARAIR CCCYARPDPT PPRRLLLLSA KASAAASPER VHGSKPAAAV RGRRRVGLTV TPSLPFPSSR
101: STRQPKQKDF YPRCTPRGPA PQSRDTPPKR DTGIASEKEW GINLLDEAVK ESGTNEDGST WYRESGEDLG ENGYRCRWAR MGGQTHDGST EWKETWWEKS
201: DWTGYKELGA EKSGKNAEGD SWWEKWKEVL HQDEWSNLAR LEKSAEKQAK SGTENAGWYE KWWEKYDAKG WTEKGAHKYG RLNEQSWWER WGEHYDGRGS
301: VLKWTDKWAE TDLGTRWGDK WEEKFFAGIG SRQGETWHAS PGGDRWSRTW GEEHFGNGKV HKYGKSTTGE SWDLVVDEET YYEADPHYGW ADVVGDSSQL
401: LSIQPVERPP GVFPTIDFSS SPPRTEEPPG MPPSSLE

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.