Factsheet for AT1G42430.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039888.1-P	Field mustard	nucleus	83.1	86.13
CDY48820	Canola	nucleus	83.1	86.13
CDX80743	Canola	nucleus, plastid	82.86	85.89
Zm00001d027532_P002	Maize	nucleus	50.47	83.66
Solyc12g094570.1.1	Tomato	cytosol	40.85	83.25
GSMUA_Achr1P02740_001	Banana	nucleus	63.15	81.76
Os03t0133300-01	Rice	plastid	66.43	81.09
PGSC0003DMT400083920	Potato	cytosol	9.62	74.55
PGSC0003DMT400025823	Potato	plastid	72.54	71.53
Solyc04g082290.2.1	Tomato	plastid	73.0	71.33
VIT_18s0001g00110.t01	Wine grape	nucleus	71.83	70.83
GSMUA_Achr4P25500_001	Banana	mitochondrion	68.31	69.62
PGSC0003DMT400075384	Potato	nucleus	69.72	69.23
KRH51626	Soybean	nucleus, plastid	72.07	68.37
OQU93301	Sorghum	plastid	66.43	65.97
TraesCS4D01G326500.1	Wheat	plastid	66.67	65.89
TraesCS5A01G501000.1	Wheat	cytosol, plastid	66.43	65.51
KRH60951	Soybean	nucleus	56.81	65.23
Zm00001d048349_P002	Maize	plastid	65.96	65.2
TraesCS4B01G329400.1	Wheat	plastid	66.67	64.99
Solyc12g094580.1.1	Tomato	nucleus	20.66	42.93
VIT_03s0038g02700.t01	Wine grape	cytosol	13.38	41.01
AT3G55760.1	Thale cress	plastid	30.75	22.66

Protein Annotations

MapMan:3.2.3.1.3	EntrezGene:840847	UniProt:A0A178WPB0	ProteinID:AEE31916.1	ArrayExpress:AT1G42430	EnsemblPlantsGene:AT1G42430
RefSeq:AT1G42430	TAIR:AT1G42430	RefSeq:AT1G42430-TAIR-G	EnsemblPlants:AT1G42430.1	TAIR:AT1G42430.1	UniProt:F4I9G2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0030246	GO:GO:0043036	GO:GO:2000904	GO:GO:2001070	RefSeq:NP_174971.5	ProteinID:OAP19373.1
PO:PO:0000293	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	UniParc:UPI0001A7B1D6	SEG:seg	:

Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]

Coordinates

chr1:+:15891281..15894576

Molecular Weight (calculated)

48976.9 Da

IEP (calculated)

5.854

GRAVY (calculated)

-1.154

Length

426 amino acids

Sequence
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.