CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027532_P002	Maize	nucleus	47.66	83.27
GSMUA_Achr1P02740_001	Banana	nucleus	59.91	81.76
KRH60951	Soybean	nucleus	67.26	81.4
Solyc12g094570.1.1	Tomato	cytosol	37.86	81.34
Os03t0133300-01	Rice	plastid	60.36	77.65
Bra039888.1-P	Field mustard	nucleus	69.49	75.91
CDX80743	Canola	nucleus, plastid	69.49	75.91
CDY48820	Canola	nucleus	69.49	75.91
VIT_18s0001g00110.t01	Wine grape	nucleus	70.6	73.38
AT1G42430.1	Thale cress	nucleus	68.37	72.07
PGSC0003DMT400025823	Potato	plastid	69.04	71.76
PGSC0003DMT400075384	Potato	nucleus	68.15	71.33
Solyc04g082290.2.1	Tomato	plastid	69.04	71.1
GSMUA_Achr4P25500_001	Banana	mitochondrion	65.03	69.86
PGSC0003DMT400083920	Potato	cytosol	8.46	69.09
OQU93301	Sorghum	plastid	65.03	68.07
TraesCS4D01G326500.1	Wheat	plastid	64.37	67.05
Zm00001d048349_P002	Maize	plastid	64.37	67.05
TraesCS5A01G501000.1	Wheat	cytosol, plastid	64.37	66.9
TraesCS4B01G329400.1	Wheat	plastid	64.59	66.36
Solyc12g094580.1.1	Tomato	nucleus	23.61	51.71
VIT_03s0038g02700.t01	Wine grape	cytosol	12.03	38.85
KRH69067	Soybean	mitochondrion, nucleus	30.51	23.83

Protein Annotations

EMBL:ACUP02003382	EnsemblPlants:KRH51626	EnsemblPlantsGene:GLYMA_06G018700	EntrezGene:100788155	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3
ProteinID:KRH51626	ProteinID:KRH51626.1	SEG:seg	UniParc:UPI000233A301	UniProt:I1K7E2	MapMan:3.2.3.1.3

Description

hypothetical protein

Coordinates

chr6:-:1410565..1419075

Molecular Weight (calculated)

51557.9 Da

IEP (calculated)

6.262

GRAVY (calculated)

-1.179

Length

449 amino acids

Sequence
(BLAST)

001: MAASSRGFST TQFDFKLRVT RLNAALLPKS PVLELGPRKR RKLCFDADRV RLGNGAIRCC CSDSVTPIRR TSGPGKGGDK NEERRFDTKK PPHIHRVRVQ
101: ASPAAMPFAS PPSFLKQEKF FPRCTPRNSG PQSRDTPPKR DTGIANEKDW GISLLNENVN ESGTNEDGST WYRESGEELG ENGYKCRWTR MGGQSHDGSS
201: EWKETWWEKS DWTGYKELGV EKSGRNSEGD TWWETWQENL HQDEWSNIAR IERSAQKQAK SGTENAGWYE KWWEKYDAKG WTEKGAHKYG RLNEQSWWEK
301: WGEHYDGRGS VLKWTDKWAE TELGTKWGDK WEERFFKGIG SRHGETWHVS PSSERWSRTW GEEHFGNGKV HKYGNSTTGE SWDIVVDEET YYEAEPHYGW
401: ADVVGDSSQL LSIEPRERPP GVFPNLDFGS PPSPEAHDDS LEEDLPPSQ

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.