Factsheet for GSMUA_Achr4P25500_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02740_001	Banana	nucleus	70.81	89.97
Zm00001d027532_P002	Maize	nucleus	53.11	86.38
Os03t0133300-01	Rice	plastid	69.86	83.67
Solyc12g094570.1.1	Tomato	cytosol	40.67	81.34
PGSC0003DMT400083920	Potato	cytosol	9.57	72.73
OQU93301	Sorghum	plastid	74.64	72.73
Zm00001d048349_P002	Maize	plastid	74.4	72.16
TraesCS4D01G326500.1	Wheat	plastid	74.16	71.93
TraesCS5A01G501000.1	Wheat	cytosol, plastid	73.44	71.06
Bra039888.1-P	Field mustard	nucleus	69.62	70.8
CDY48820	Canola	nucleus	69.62	70.8
CDX80743	Canola	nucleus, plastid	69.38	70.56
TraesCS4B01G329400.1	Wheat	plastid	73.68	70.48
VIT_18s0001g00110.t01	Wine grape	nucleus	72.25	69.91
AT1G42430.1	Thale cress	nucleus	69.62	68.31
PGSC0003DMT400025823	Potato	plastid	68.42	66.2
Solyc04g082290.2.1	Tomato	plastid	68.42	65.6
PGSC0003DMT400075384	Potato	nucleus	66.99	65.27
KRH51626	Soybean	nucleus, plastid	69.86	65.03
KRH60951	Soybean	nucleus	52.87	59.57
VIT_03s0038g02700.t01	Wine grape	cytosol	13.16	39.57
Solyc12g094580.1.1	Tomato	nucleus	18.9	38.54
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	34.21	25.44
GSMUA_Achr1P14060_001	Banana	plastid	33.25	24.26

Protein Annotations

EnsemblPlants:GSMUA_Achr4P25500_001	EnsemblPlants:GSMUA_Achr4T25500_001	EnsemblPlantsGene:GSMUA_Achr4G25500_001	PANTHER:PTHR34113	PANTHER:PTHR34113:SF3	SEG:seg
UniParc:UPI0002954059	UniProt:M0SS11	MapMan:3.2.3.1.3	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G25500_001]

Coordinates

chr4:+:24996412..25007667

Molecular Weight (calculated)

47666.8 Da

IEP (calculated)

5.615

GRAVY (calculated)

-1.074

Length

418 amino acids

Sequence
(BLAST)

001: MAARSGGLAA APFDLGFGRI RLPPLLWMPS CARAGAGRGG VGRVVRCCCP AEKAEDCWLE PKKKVGTRRA RAEALPSLPF PSTRSKRLSK QQDFSSRCSP
101: KSSAPESRDT PPKRDTGIAS EKEWGINLLD EMVNEFGTNE DGSTWYREDG EELGDNGYRC RWARMGGKSH DGSSEWKETW WEKSDWTGYK ELGAEKSGKN
201: ADGDSWWETW KEVLYQDEWS NLARIERSAQ KQAKSGTENA GWYEKWLEKY DAKGWTEKGA HKYGRLNEQS WWEKWGEHYD GRGFVLKWTD KWAETELGTR
301: WGDKWEEKFF AGIGSRQGET WHVSPTGERW SRTWGEEHLG NGKVHKYGKS TTGESWDIVV DEETYYEAEP HYGWADVVGD STQLLSIQPQ ERPPGVYPNL
401: DFGTSEPRKD DPPVEPLK

Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)

001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.