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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 4
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400075384 Potato nucleus 85.37 40.79
VIT_18s0001g00110.t01 Wine grape nucleus 52.2 24.77
Solyc04g082290.2.1 Tomato plastid 50.73 23.85
KRH51626 Soybean nucleus, plastid 51.71 23.61
Bra039888.1-P Field mustard nucleus 45.37 22.63
CDY48820 Canola nucleus 45.37 22.63
CDX80743 Canola nucleus, plastid 44.88 22.38
AT1G42430.1 Thale cress nucleus 42.93 20.66
Os03t0133300-01 Rice plastid 35.12 20.63
Zm00001d048349_P002 Maize plastid 42.44 20.19
OQU93301 Sorghum plastid 41.46 19.81
TraesCS4D01G326500.1 Wheat plastid 40.49 19.26
GSMUA_Achr4P25500_001 Banana mitochondrion 38.54 18.9
TraesCS5A01G501000.1 Wheat cytosol, plastid 39.51 18.75
TraesCS4B01G329400.1 Wheat plastid 39.02 18.31
GSMUA_Achr1P02740_001 Banana nucleus 28.29 17.63
KRH60951 Soybean nucleus 23.9 13.21
Solyc06g053920.2.1 Tomato nucleus, plastid 16.1 5.97
Zm00001d027532_P002 Maize nucleus 5.37 4.28
VIT_03s0038g02700.t01 Wine grape cytosol 1.95 2.88
PGSC0003DMT400083920 Potato cytosol 0.0 0.0
Solyc12g094570.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc12g094580.1.1EnsemblPlantsGene:Solyc12g094580.1PANTHER:PTHR34113PANTHER:PTHR34113:SF3SEG:segUniParc:UPI0002769899
UniProt:K4DH30MapMan:35.2::::
Description
No Description!
Coordinates
chr12:-:64762133..64764645
Molecular Weight (calculated)
22483.3 Da
IEP (calculated)
9.583
GRAVY (calculated)
-0.766
Length
205 amino acids
Sequence
(BLAST)
001: MAAAAAATTA AAGSNGLTGP LGGKLKRVDV GIGFVELQRK RRRVFGVKCC CSDSVVPIRG INGCVEKCDN WRFESKKSSH SYRVKVQASS SSSSTMPFAS
101: PKSRFASKQE QFFPRCTPRN SGPQSHDSPP KRDTGIANEK EWGIDMLNEN VNESGTNEDG STWYRKSGEN IGENGYRCRW TKMGGKSHDG ASEWKEMVDA
201: FNWIS
Best Arabidopsis Sequence Match ( AT1G42430.1 )
(BLAST)
001: MSEMAASSAI SLLDIKLRRF GVGASNHELR LTKWFKGDQA GAPTRRFTCF ADMLAPIRRS EKSEERRFDQ KMSAHGAGIK TSSSAVPFAS PKSRFLSKQE
101: KFYPRCTPRL TGPQSRDTPP KRDTGIANEK DWGIDLLNEN VNEAGTNEDG SSWFRESGHD LGDNGYRCRW SRMGGRSHDG SSEWTETWWE KSDWTGYKEL
201: GVEKSGKNSE GDSWWETWQE VLHQDEWSNL ARIERSAQKQ AKSGTENAGW YEKWWEKYDA KGWTEKGAHK YGRLNEQSWW EKWGEHYDGR GSVLKWTDKW
301: AETELGTKWG DKWEEKFFSG IGSRQGETWH VSPNSDRWSR TWGEEHFGNG KVHKYGKSTT GESWDIVVDE ETYYEAEPHY GWADVVGDST QLLSIQPRER
401: PPGVYPNLEF GPSPPPEPDL PPDQPQ
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G42430]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.