CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023783.1-P	Field mustard	nucleus	83.73	83.07
CDY40826	Canola	mitochondrion, nucleus, plastid	93.37	81.72
AT3G55760.1	Thale cress	plastid	77.51	66.78
HORVU4Hr1G039880.1	Barley	nucleus, plastid	39.76	47.83
Solyc06g053920.2.1	Tomato	nucleus, plastid	50.6	45.57
VIT_05s0020g04440.t01	Wine grape	plastid	51.61	45.01
KRH69067	Soybean	mitochondrion, nucleus	51.81	44.87
PGSC0003DMT400042064	Potato	plastid	49.8	44.77
GSMUA_Achr8P26900_001	Banana	mitochondrion, plastid	48.59	43.06
TraesCS4A01G149300.1	Wheat	nucleus	45.58	41.73
TraesCS4B01G158500.1	Wheat	plastid	48.8	40.77
EES10011	Sorghum	plastid	49.0	40.33
Zm00001d052977_P001	Maize	plastid	47.19	40.31
GSMUA_Achr1P14060_001	Banana	plastid	45.98	39.97
Os11t0586300-01	Rice	plastid	42.17	39.11
HORVU4Hr1G039870.1	Barley	mitochondrion, nucleus, plastid	48.19	38.59
CDX80743	Canola	nucleus, plastid	20.48	24.82
CDY48820	Canola	nucleus	20.28	24.57

Protein Annotations

EnsemblPlants:CDY35481	EnsemblPlantsGene:GSBRNA2T00058510001	PANTHER:PTHR34113	PANTHER:PTHR34113:SF2	ProteinID:CDY35481	ProteinID:CDY35481.1
SEG:seg	UniParc:UPI0004EEB8CC	UniProt:A0A078HCK2	MapMan:35.2	:	:

Description

BnaA01g24310DBnaA01g24310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCK2]

Coordinates

chrLK032353:-:11725..13496

Molecular Weight (calculated)

56274.2 Da

IEP (calculated)

4.857

GRAVY (calculated)

-1.001

Length

498 amino acids

Sequence
(BLAST)

001: MASRLGVSLR AALTAPHAPH FDDGTRRHSS SIFTAPFPNR RNRTGSRTLR VSNDGPESYL DMWKNAVDRE KKEKAFEKIA ENVASDGEDG DLNKKSDEFQ
101: KILEVSVEER DRIQRMQVVD RAAAAISAAK AILASNNSGD GNDGFQDEEK SGNDAKSKGM WSRTVYVPRS ETSGSETPGP DFWSWTPPEM SSNASMDLQP
201: KPSEFPTLSN PVLEKEPSSD SLSIPYESML STERHSFVIP PFESLIEVKK ETETETKSIS SEHDLDAVSS ANAEEAARVL DGLDDSSSSG VSQEGLKWWK
301: QTGVEKRPDG VVCRWTMIRG VTADGVVEWQ DKYWEASDDF GFKELGSEKS GRDAAGNVWR EFWREAMMQE NGVVHMEKTA DKWGKSGQGD EWQEKWFEHY
401: DATGKSEKWA HKWCSLDRNT PLDVGHAHVW HERWGEKYDG QGGSTKYTDK WAERWVGDGW DKWGDKWDEN FNPSAQGVKQ GETWWEGKHG DRWNRSWG

Best Arabidopsis Sequence Match ( AT3G55760.2 )
(BLAST)

001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS

Arabidopsis Description

At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.