Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G039880.1 | Barley | nucleus, plastid | 69.85 | 91.79 |
| TraesCS4B01G158500.1 | Wheat | plastid | 94.67 | 86.41 |
| HORVU4Hr1G039870.1 | Barley | mitochondrion, nucleus, plastid | 83.27 | 72.83 |
| Zm00001d052977_P001 | Maize | plastid | 72.06 | 67.24 |
| EES10011 | Sorghum | plastid | 73.35 | 65.95 |
| Os11t0586300-01 | Rice | plastid | 64.52 | 65.36 |
| Bra023783.1-P | Field mustard | nucleus | 50.0 | 54.18 |
| Solyc06g053920.2.1 | Tomato | nucleus, plastid | 54.04 | 53.16 |
| PGSC0003DMT400042064 | Potato | plastid | 53.68 | 52.71 |
| VIT_05s0020g04440.t01 | Wine grape | plastid | 54.96 | 52.36 |
| GSMUA_Achr8P26900_001 | Banana | mitochondrion, plastid | 53.68 | 51.96 |
| GSMUA_Achr1P14060_001 | Banana | plastid | 54.04 | 51.31 |
| CDY40826 | Canola | mitochondrion, nucleus, plastid | 49.26 | 47.1 |
| AT3G55760.1 | Thale cress | plastid | 50.0 | 47.06 |
| KRH69067 | Soybean | mitochondrion, nucleus | 49.63 | 46.96 |
| CDY35481 | Canola | mitochondrion, nucleus, plastid | 41.73 | 45.58 |
| TraesCS5A01G501000.1 | Wheat | cytosol, plastid | 25.55 | 32.18 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G149300.1 | EnsemblPlantsGene:TraesCS4A01G149300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0005982 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0030246 | GO:GO:0043036 |
| GO:GO:2001070 | PANTHER:PTHR34113 | PANTHER:PTHR34113:SF2 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4A:+:284949026..284952071
Molecular Weight (calculated)
61558.3 Da
IEP (calculated)
6.260
GRAVY (calculated)
-1.100
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MWKKAVNRER RSAELAYRLQ ASPPPAEAEG PQQADVERRT ARFEEMLRVP REERDRVQRT QVIDRAAAAL AAARAVLKEP PQSSPTPQPQ KVAAATRVTG
101: SGDVFGSRKA AKGPEDQGSG QGSVPAASQS AKVTNSGDSY PSKLGTPGPD FWSWLPPVDT SSEPRENNIV LKPSKKVDSF SSQPEMLMEK ERSADFLSLP
201: FVTSFFEKKE DRSLPPFQSF AEPENVDSGA MPVVDAEEAF ETQFSNNAAE AARALSTSDD KSSHGIDPDG SKWWKETGVE QRPDGVVCKW TVIRGVSPDG
301: SVEFEDKYWE ASDRFDHKEL GSEKSGRDAR GNVWREYWKE SMWQDFTSGL MHMEKSADKW GKNGKGEQWQ EKWWEQYDSS GKAEKSADKW CSLDPNTTLD
401: VGHAHVWHER WGETYDGSGG SVKYTDKWAE RSEGDGWSKW GDKWDEHFDR NGHGVKQGET WWEGKYGDRW NRTWGEGHNG SGWVHKYGRS SSGEHWDTHE
501: QQKTWYQRYP HFGFHHCFEN SVKLLSVPRQ PPKNIKPGKR VDAP
101: SGDVFGSRKA AKGPEDQGSG QGSVPAASQS AKVTNSGDSY PSKLGTPGPD FWSWLPPVDT SSEPRENNIV LKPSKKVDSF SSQPEMLMEK ERSADFLSLP
201: FVTSFFEKKE DRSLPPFQSF AEPENVDSGA MPVVDAEEAF ETQFSNNAAE AARALSTSDD KSSHGIDPDG SKWWKETGVE QRPDGVVCKW TVIRGVSPDG
301: SVEFEDKYWE ASDRFDHKEL GSEKSGRDAR GNVWREYWKE SMWQDFTSGL MHMEKSADKW GKNGKGEQWQ EKWWEQYDSS GKAEKSADKW CSLDPNTTLD
401: VGHAHVWHER WGETYDGSGG SVKYTDKWAE RSEGDGWSKW GDKWDEHFDR NGHGVKQGET WWEGKYGDRW NRTWGEGHNG SGWVHKYGRS SSGEHWDTHE
501: QQKTWYQRYP HFGFHHCFEN SVKLLSVPRQ PPKNIKPGKR VDAP
001: MALRLGVSIG AALGSSHWDD GQRVRQRDFS ASVNFTAPVT SRRSLRGSRT GVRILRVSNE GRESYLDMWK NAVDREKKEK AFEKIAENVV AVDGEKEKGG
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS
101: DLEKKSDEFQ KILEVSVEER DRIQRMQVVD RAAAAISAAR AILASNNSGD GKEGFPNEDN TVTSEVTETP KNAKLGMWSR TVYVPRSETS GTETPGPDFW
201: SWTPPQGSEI SSVDLQAVEK PAEFPTLPNP VLEKDKSADS LSIPYESMLS SERHSFTIPP FESLIEVRKE AETKPSSETL STEHDLDLIS SANAEEVARV
301: LDSLDESSTH GVSEDGLKWW KQTGVEKRPD GVVCRWTMIR GVTADGVVEW QDKYWEASDD FGFKELGSEK SGRDATGNVW REFWRESMSQ ENGVVHMEKT
401: ADKWGKSGQG DEWQEKWWEH YDATGKSEKW AHKWCSIDRN TPLDAGHAHV WHERWGEKYD GQGGSTKYTD KWAERWVGDG WDKWGDKWDE NFNPSAQGVK
501: QGETWWEGKH GDRWNRSWGE GHNGSGWVHK YGKSSSGEHW DTHVPQETWY EKFPHFGFFH CFDNSVQLRA VKKPSDMS
Arabidopsis Description
At3g55760 [Source:UniProtKB/TrEMBL;Acc:Q5EAH9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.