Factsheet for Solyc12g077540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g056280.2.1
Solyc12g077540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	Solyc12g077540.1.1	AT1G13450.1	21245844
AT1G13450.1	Solyc04g056280.2.1	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31419	Soybean	nucleus	68.44	55.08
KRG97471	Soybean	nucleus	68.77	55.05
VIT_01s0010g02420.t01	Wine grape	nucleus	67.11	54.59
TraesCS2D01G343200.1	Wheat	nucleus	52.49	54.3
CDY30031	Canola	nucleus	62.46	47.12
CDY26652	Canola	cytosol	60.8	46.8
CDX98101	Canola	nucleus	61.46	46.37
Bra019721.1-P	Field mustard	nucleus	61.46	46.25
AT1G13450.1	Thale cress	nucleus	62.13	46.06
Bra026903.1-P	Field mustard	nucleus	61.46	46.02
CDY16091	Canola	nucleus	61.13	45.66
TraesCS2A01G320100.1	Wheat	nucleus	53.82	44.88
TraesCS2B01G363200.2	Wheat	nucleus	53.49	44.6
HORVU2Hr1G084030.2	Barley	cytosol	52.82	44.04
Zm00001d025720_P002	Maize	nucleus	51.83	41.16
EES11021	Sorghum	nucleus	52.16	41.1
HORVU2Hr1G046270.1	Barley	cytosol	20.27	38.85
GSMUA_Achr5P17240_001	Banana	nucleus	27.91	38.53
VIT_17s0000g10420.t01	Wine grape	nucleus	42.19	37.13
Solyc09g005560.2.1	Tomato	nucleus	14.29	14.68
Solyc08g005900.2.1	Tomato	nucleus	14.29	13.19

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042802	GO:GO:0043565	InterPro:IPR017877	UniProt:K4DGH4	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45169	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:Solyc12g077540.1
EnsemblPlants:Solyc12g077540.1.1	UniParc:UPI000276A81C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:20389532..20402173

Molecular Weight (calculated)

33966.7 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.893

Length

301 amino acids

Sequence
(BLAST)

001: MVDVVTSNSQ QQILMGGGGG GGDTTSSGGE ENCTNPCSDV KTPKKRAETW VQEETRVLIG LRREIDSLFN TSKSNKHLWD QISMKMREKG FDRSPTMCTD
101: KWRNLLKEFK KAKQNQDRNG SAKMSYYKEI DEILRDRTNT PLPPPPKVDS FMHFAQKGLD DTSITFGPVE ENGRPTLNLE RRLDHDGHPL AITAADAVTA
201: SGVSPWNWRE PHGTGEPSQS YEGRVISVKW GDYTKRIGID GTADAIKEAI KSAFRLRTKR AFWLEDEDNI VRTLDRDMPL GNYTLHVDEG PQYGTDDWNR
301: T

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.