Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13450.1 | EES11021 | AT1G13450.1 | 21245844 |
| AT1G13450.1 | EES15089 | AT5G10270.1 | 12678503 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025720_P002 | Maize | nucleus | 90.84 | 91.56 |
| HORVU2Hr1G046270.1 | Barley | cytosol | 30.63 | 74.52 |
| TraesCS2D01G343200.1 | Wheat | nucleus | 55.24 | 72.51 |
| TraesCS2B01G363200.2 | Wheat | nucleus | 67.54 | 71.47 |
| TraesCS2A01G320100.1 | Wheat | nucleus | 66.75 | 70.64 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 66.23 | 70.08 |
| GSMUA_Achr5P17230_001 | Banana | cytosol | 32.2 | 59.71 |
| GSMUA_Achr3P19370_001 | Banana | nucleus | 56.28 | 58.58 |
| KRH31419 | Soybean | nucleus | 52.36 | 53.48 |
| KRG97471 | Soybean | nucleus | 52.36 | 53.19 |
| VIT_01s0010g02420.t01 | Wine grape | nucleus | 51.31 | 52.97 |
| VIT_14s0171g00450.t01 | Wine grape | nucleus | 52.36 | 52.91 |
| Solyc12g077540.1.1 | Tomato | nucleus | 41.1 | 52.16 |
| CDY40984 | Canola | nucleus | 51.31 | 49.87 |
| CDX97872 | Canola | cytosol | 11.26 | 49.43 |
| CDY26652 | Canola | cytosol | 50.52 | 49.36 |
| Bra036354.1-P | Field mustard | nucleus | 50.79 | 49.11 |
| AT3G25990.1 | Thale cress | cytosol | 47.38 | 48.66 |
| Bra026903.1-P | Field mustard | nucleus | 50.26 | 47.76 |
| CDY16091 | Canola | nucleus | 50.0 | 47.39 |
| CDY30031 | Canola | nucleus | 49.48 | 47.37 |
| Bra019721.1-P | Field mustard | nucleus | 49.48 | 47.25 |
| AT1G13450.1 | Thale cress | nucleus | 50.0 | 47.04 |
| CDX98101 | Canola | nucleus | 48.95 | 46.87 |
| CDX99735 | Canola | nucleus | 48.95 | 46.87 |
| CDY20323 | Canola | cytosol | 10.21 | 44.83 |
| VIT_17s0000g10420.t01 | Wine grape | nucleus | 37.43 | 41.81 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 21.47 | 37.61 |
| EES12791 | Sorghum | nucleus | 12.04 | 16.97 |
| OQU77323 | Sorghum | nucleus | 14.66 | 13.15 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:8060168 | UniProt:C5YAX3 | EnsemblPlants:EES11021 | ProteinID:EES11021 |
| ProteinID:EES11021.1 | GO:GO:0000981 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017877 | InterPro:Myb-like_dom | PFAM:PF13837 |
| PFscan:PS50090 | PANTHER:PTHR45169 | InterPro:SANT/Myb | SMART:SM00717 | EnsemblPlantsGene:SORBI_3006G126600 | UniParc:UPI0001A86FC8 |
| RefSeq:XP_002446693.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:49184565..49187682
Molecular Weight (calculated)
41890.9 Da
IEP (calculated)
6.530
GRAVY (calculated)
-0.690
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAVAGSAP KRRAETWVRE ETLCLIALRR EMDAHFNTSK SNKHLWEAIS ARMRDQGFDR SPTMCTDKWR
101: NLLKEFKKAR SHSRNSGGGS GSGAGGNGNA KMAYYKEIDD LLKRRGKATG SGSGGCVGSG AAGKSPTSNS KIESYLQFTT DNGFDDANIP FGPVEANGRP
201: ILSIDDRLED DRHPLPLTAA DAVATNGVNP WNWRDTSTNG GDNHGSFGGR VILVKWGDYT KRIGIDGTPE AIKEAIKSAF GLRTRRAFWL EDEDEVVRAL
301: DRDMPVGTYT LNLDDGITIK LCDGNRMQTP EDKTFYTEED FRDFLLRRGW TFLREYGGYR NVDSLDDLRP GVMYQGLRSL GD
101: NLLKEFKKAR SHSRNSGGGS GSGAGGNGNA KMAYYKEIDD LLKRRGKATG SGSGGCVGSG AAGKSPTSNS KIESYLQFTT DNGFDDANIP FGPVEANGRP
201: ILSIDDRLED DRHPLPLTAA DAVATNGVNP WNWRDTSTNG GDNHGSFGGR VILVKWGDYT KRIGIDGTPE AIKEAIKSAF GLRTRRAFWL EDEDEVVRAL
301: DRDMPVGTYT LNLDDGITIK LCDGNRMQTP EDKTFYTEED FRDFLLRRGW TFLREYGGYR NVDSLDDLRP GVMYQGLRSL GD
001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
Arabidopsis Description
GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.