CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036354.1-P	Field mustard	nucleus	98.47	97.97
CDX97872	Canola	cytosol	20.36	91.95
CDX99735	Canola	nucleus	92.37	90.98
AT3G25990.1	Thale cress	cytosol	65.14	68.82
CDY20323	Canola	cytosol	14.5	65.52
CDY26652	Canola	cytosol	64.12	64.45
CDY30031	Canola	nucleus	65.39	64.41
CDY16091	Canola	nucleus	65.65	64.02
CDX98101	Canola	nucleus	64.38	63.41
HORVU2Hr1G046270.1	Barley	cytosol	22.65	56.69
TraesCS2D01G343200.1	Wheat	nucleus	41.73	56.36
TraesCS2B01G363200.2	Wheat	nucleus	50.64	55.12
TraesCS2A01G320100.1	Wheat	nucleus	49.62	54.02
HORVU2Hr1G084030.2	Barley	cytosol	49.62	54.02
EES11021	Sorghum	nucleus	49.87	51.31
Zm00001d025720_P002	Maize	nucleus	48.85	50.66
GSMUA_Achr5P17240_001	Banana	nucleus	23.41	42.2
CDY14474	Canola	nucleus	16.79	22.6
CDY07745	Canola	nucleus	16.79	22.45
CDX91438	Canola	nucleus	16.29	21.92
CDX74901	Canola	nucleus	16.03	21.36
CDY04841	Canola	nucleus	13.99	17.74
CDY11203	Canola	nucleus	13.74	16.93
CDX80775	Canola	nucleus	13.49	16.61
CDY10496	Canola	nucleus	13.23	16.4

Protein Annotations

EnsemblPlants:CDY40984	EnsemblPlantsGene:GSBRNA2T00072255001	Gene3D:1.10.10.60	GO:A0A078HUE9	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY40984	ProteinID:CDY40984.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF328A	UniProt:A0A078HUE9	MapMan:15.5.20	:

Description

BnaA02g27740DBnaA02g27740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUE9]

Coordinates

chrLK032487:-:99148..100881

Molecular Weight (calculated)

45007.7 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.838

Length

393 amino acids

Sequence
(BLAST)

001: MFVSSEKPRS PIDFYKDDDD DNNNPSSPTS RHINMMIDGD LQPPPHQILL GDNSSSEDHE INTKAPKKRA ETWVQDETRI LIALRREMDG LFNTSKSNKH
101: LWEEISSKMR EKGFDRSPAM CTDKWRNLLK EFKKAAKDQQ VSGKMSHYKE IEDLLRERSK KVTTSYKSVT APSKVDSFMQ FTDKGFEDTG LSFASVEANG
201: RPTLNLERQL DHDGHPLAIA SADAVTANGV PPWNWREPAG NGKSSDGQPF VGKIITVKYG DYTRRVGIDG TAEAIKEAIR SAFRLRTRRA FWLEDEEEVV
301: RSLDRDMPLG NYTLHVDEGI AVRVCHYDES DPLPVHQEEK VFYTEEDYRD FLGRRGWTCL REFDGGFRNI ESMVRNVDSM DDLQPGVLYR GMR

Best Arabidopsis Sequence Match ( AT3G25990.1 )
(BLAST)

001: MFVSDNNNPS RDINMMIGDV TSNGDLQPHQ IILGESSGGE DHEIIKAPKK RAETWAQDET RTLISLRREM DNLFNTSKSN KHLWEQISKK MREKGFDRSP
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR

Arabidopsis Description

GT-4Trihelix transcription factor GT-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.