CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028899.1-P	Field mustard	nucleus	64.84	82.04
CDY10496	Canola	nucleus	68.71	67.19
CDY11203	Canola	nucleus	69.03	67.08
CDX80775	Canola	nucleus	67.74	65.83
AT5G01380.1	Thale cress	nucleus	66.45	63.78
KRH75965	Soybean	nucleus	42.58	48.53
KRH65719	Soybean	cytosol	42.26	47.99
VIT_08s0105g00400.t01	Wine grape	nucleus	42.58	47.65
PGSC0003DMT400077751	Potato	nucleus	45.48	47.32
Solyc09g005560.2.1	Tomato	nucleus	43.87	46.42
KRH49393	Soybean	nucleus	42.9	45.7
CDY07745	Canola	nucleus	42.26	44.56
CDY14474	Canola	nucleus	41.94	44.52
KRH00261	Soybean	nucleus	41.94	44.52
CDX74901	Canola	nucleus	41.94	44.07
CDX91438	Canola	nucleus	40.32	42.81
GSMUA_Achr8P21100_001	Banana	nucleus	21.29	32.35
TraesCS1D01G072600.1	Wheat	nucleus	32.26	31.35
TraesCS1B01G088500.1	Wheat	nucleus	31.61	30.43
Os05t0128000-00	Rice	nucleus	31.94	29.73
HORVU1Hr1G014950.2	Barley	mitochondrion	31.61	27.76
Zm00001d035457_P001	Maize	nucleus	29.35	27.16
OQU77323	Sorghum	nucleus	30.32	22.07
CDY20323	Canola	cytosol	4.19	14.94
CDX97872	Canola	cytosol	4.19	14.94
CDY26652	Canola	cytosol	18.06	14.32
CDX99735	Canola	nucleus	18.06	14.04
CDY40984	Canola	nucleus	17.74	13.99
CDY16091	Canola	nucleus	17.74	13.65
CDY30031	Canola	nucleus	17.42	13.53
CDX98101	Canola	nucleus	17.42	13.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078EUC5	EnsemblPlants:CDY04841	ProteinID:CDY04841	ProteinID:CDY04841.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00119554001
InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3
UniParc:UPI0004EE9B49	SEG:seg	:	:	:	:

Description

BnaAnng00230D

Coordinates

chrLK031958:+:197303..198951

Molecular Weight (calculated)

37008.7 Da

IEP (calculated)

6.814

GRAVY (calculated)

-1.212

Length

310 amino acids

Sequence
(BLAST)

001: MDRRNPFHHH DHQLYQLIQQ QQLPPPPQST TVAMDLGGGG ERIPQWSIDE TKELLGIREE LDQTFMETKR NKLLWEVVVA KMADKGFARS AEQCKSKWKN
101: LVSRYKVCET TEPEPIRQQF PFYNEIQSIF TARMQRMLWS EPRTSSKRKH NQFSSDEEVE EVAELNQDIN KELLSFVETQ KKDTEVITTS TFTNPKKRAK
201: KGKGTSKAET AGSTLKEMLE DFMRQTVKME KEWRDTWEMK AREKEKREKE WQRRMAELEE ERAAAERRWM EREDERRLRE EARAQKRDTL IDVLLNQLNR
301: DQDDDQHQGF

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.