Factsheet for TraesCS1B01G088500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G072600.1	Wheat	nucleus	88.51	89.34
HORVU1Hr1G014950.2	Barley	mitochondrion	78.88	71.95
Os05t0128000-00	Rice	nucleus	67.08	64.86
Zm00001d035457_P001	Maize	nucleus	59.32	57.01
OQU77323	Sorghum	nucleus	59.94	45.31
GSMUA_Achr8P21100_001	Banana	nucleus	25.47	40.2
KRH75965	Soybean	nucleus	32.92	38.97
KRH65719	Soybean	cytosol	31.99	37.73
AT2G38250.1	Thale cress	nucleus	33.85	37.72
Bra005127.1-P	Field mustard	nucleus	33.85	37.33
CDX91438	Canola	nucleus	33.54	36.99
CDY14474	Canola	nucleus	33.54	36.99
KRH49393	Soybean	nucleus	33.23	36.77
KRH00261	Soybean	nucleus	33.23	36.64
CDX74901	Canola	nucleus	33.54	36.61
CDY07745	Canola	nucleus	33.23	36.39
Bra000046.1-P	Field mustard	nucleus	33.23	36.39
VIT_08s0105g00400.t01	Wine grape	nucleus	31.06	36.1
Bra005688.1-P	Field mustard	nucleus	31.99	36.01
CDY10496	Canola	nucleus	34.16	34.7
CDX80775	Canola	nucleus	33.23	33.54
CDY11203	Canola	nucleus	33.23	33.54
Solyc09g005560.2.1	Tomato	nucleus	30.43	33.45
PGSC0003DMT400077751	Potato	nucleus	30.75	33.22
TraesCS2B01G457200.1	Wheat	nucleus	27.64	33.09
AT5G01380.1	Thale cress	nucleus	32.61	32.51
CDY04841	Canola	nucleus	30.43	31.61
Bra028899.1-P	Field mustard	nucleus	23.91	31.43
TraesCS2B01G363200.2	Wheat	nucleus	15.53	13.85

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	EnsemblPlantsGene:TraesCS1B01G088500
EnsemblPlants:TraesCS1B01G088500.1	InterPro:Trihelix_TF_GT3	TIGR:cd12203	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:84979983..84980951

Molecular Weight (calculated)

36085.8 Da

IEP (calculated)

6.162

GRAVY (calculated)

-1.003

Length

322 amino acids

Sequence
(BLAST)

001: MDPFHHLNTA FSNPYHPLLS SSPPHPYHPP PPLPPPPAAA PADPPERERL PQWSHAETAA FLAIRADLDH SFLSTKRNKA LWEAVSARLN AQGGFARTPD
101: QCKSKWKNLV TRFKGTASDA QPEGGDHHAG AAARGSFPFH DEMRRIFDAR VERARALEAK KVKGKEAAAR RDPDDDGGGE GDEGEDDEEE AEMFDEEEGR
201: ADAETRGAGR KRRRKAAPAR TASAGGGVEI GEVEAVLREF MRRQMEMEER WMEAAEARDA ERRAREEEWR AAMVALGEER LALVRRWRER EDAWRARAEE
301: REERRHQLVA ALLAKLGGDT SS

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.