Factsheet for Bra005127.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74901	Canola	nucleus	97.26	96.27
CDX91438	Canola	nucleus	94.86	94.86
Bra000046.1-P	Field mustard	nucleus	82.88	82.31
AT2G38250.1	Thale cress	nucleus	79.11	79.93
KRH65719	Soybean	cytosol	49.32	52.75
VIT_08s0105g00400.t01	Wine grape	nucleus	49.32	51.99
KRH75965	Soybean	nucleus	48.29	51.84
PGSC0003DMT400077751	Potato	nucleus	52.4	51.34
Solyc09g005560.2.1	Tomato	nucleus	51.03	50.85
KRH00261	Soybean	nucleus	50.68	50.68
KRH49393	Soybean	nucleus	50.34	50.52
Bra005688.1-P	Field mustard	nucleus	46.23	47.2
Bra028899.1-P	Field mustard	nucleus	38.7	46.12
GSMUA_Achr8P21100_001	Banana	nucleus	26.71	38.24
TraesCS1D01G072600.1	Wheat	nucleus	38.36	35.11
TraesCS1B01G088500.1	Wheat	nucleus	37.33	33.85
Os05t0128000-00	Rice	nucleus	36.3	31.83
Zm00001d035457_P001	Maize	nucleus	35.27	30.75
HORVU1Hr1G014950.2	Barley	mitochondrion	36.99	30.59
OQU77323	Sorghum	nucleus	36.3	24.88
Bra036354.1-P	Field mustard	nucleus	20.89	15.44
Bra019721.1-P	Field mustard	nucleus	20.21	14.75
Bra026903.1-P	Field mustard	nucleus	19.86	14.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EnsemblPlantsGene:Bra005127	EnsemblPlants:Bra005127.1	EnsemblPlants:Bra005127.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	UniProt:M4CLP0
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:SANT/Myb	SMART:SM00717
InterPro:Trihelix_TF_GT3	UniParc:UPI00025477B2	SEG:seg	:	:	:

Description

AT2G38250 (E=3e-075) | DNA-binding protein-related

Coordinates

chrA05:-:3569693..3570783

Molecular Weight (calculated)

34857.0 Da

IEP (calculated)

6.806

GRAVY (calculated)

-1.262

Length

292 amino acids

Sequence
(BLAST)

001: MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SLEETKELIA IRGELDQTFM ETKRNKLLWE VVSNKMRDKS FLRSPEQCKC KWKNLVTRFK
101: GCETMDEEIA RQQFPFYDDM QIIFASRMQR MLWAESEGGG GTSGATRKRS HSEQFSSDEE EENVNEELVG ISNESKTLNP EKNIAKKRKG GISNSSGGAN
201: NNVREVLDEF MRHQMRMENE WRERWEAREK ERAEKEEEWR RKMEELEKER MAMERMWRDR EEQRRSREEL RAEKRDSLIN TLLAKLTRDG SL

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.