Factsheet for AT2G38250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005127.1-P	Field mustard	nucleus	79.93	79.11
CDY14474	Canola	nucleus	79.58	78.77
CDX91438	Canola	nucleus	78.89	78.08
CDY07745	Canola	nucleus	79.24	77.89
CDX74901	Canola	nucleus	79.24	77.63
Bra000046.1-P	Field mustard	nucleus	78.89	77.55
KRH65719	Soybean	cytosol	52.25	55.31
KRH75965	Soybean	nucleus	51.9	55.15
PGSC0003DMT400077751	Potato	nucleus	55.02	53.36
VIT_08s0105g00400.t01	Wine grape	nucleus	50.87	53.07
KRH49393	Soybean	nucleus	52.6	52.23
Solyc09g005560.2.1	Tomato	nucleus	52.94	52.22
KRH00261	Soybean	nucleus	52.6	52.05
AT5G01380.1	Thale cress	nucleus	50.52	45.2
GSMUA_Achr8P21100_001	Banana	nucleus	24.57	34.8
TraesCS1D01G072600.1	Wheat	nucleus	38.41	34.8
TraesCS1B01G088500.1	Wheat	nucleus	37.72	33.85
Os05t0128000-00	Rice	nucleus	37.37	32.43
Zm00001d035457_P001	Maize	nucleus	35.64	30.75
HORVU1Hr1G014950.2	Barley	mitochondrion	36.33	29.75
OQU77323	Sorghum	nucleus	36.33	24.65
AT3G25990.1	Thale cress	cytosol	22.84	17.74
AT1G13450.1	Thale cress	nucleus	21.11	15.02

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EntrezGene:818404	UniProt:A0A178VPR5	ProteinID:AAC27174.1	ProteinID:AEC09513.1
EMBL:AF453582	ArrayExpress:AT2G38250	EnsemblPlantsGene:AT2G38250	RefSeq:AT2G38250	TAIR:AT2G38250	RefSeq:AT2G38250-TAIR-G
EnsemblPlants:AT2G38250.1	TAIR:AT2G38250.1	EMBL:AY271678	ncoils:Coil	GO:GO:0000981	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016592	GO:GO:0043565	InterPro:IPR017877	InterPro:Myb-like_dom	RefSeq:NP_181360.1
UniProt:O80450	ProteinID:OAP07786.1	PFAM:PF13837	PO:PO:0000293	PO:PO:0007611	PO:PO:0007616
PO:PO:0009029	PFscan:PS50090	PANTHER:PTHR45378	InterPro:SANT/Myb	SMART:SM00717	InterPro:Trihelix_TF_GT3
UniParc:UPI00000A41F6	SEG:seg	:	:	:	:

Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]

Coordinates

chr2:+:16018210..16020156

Molecular Weight (calculated)

34309.3 Da

IEP (calculated)

7.025

GRAVY (calculated)

-1.257

Length

289 amino acids

Sequence
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.