Factsheet for GSMUA_Achr8P21100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G072600.1	Wheat	nucleus	42.65	27.27
Bra005127.1-P	Field mustard	nucleus	38.24	26.71
CDX74901	Canola	nucleus	38.24	26.44
CDX91438	Canola	nucleus	37.25	26.03
TraesCS1B01G088500.1	Wheat	nucleus	40.2	25.47
VIT_08s0105g00400.t01	Wine grape	nucleus	34.31	25.27
KRH00261	Soybean	nucleus	35.29	24.66
CDY14474	Canola	nucleus	35.29	24.66
AT2G38250.1	Thale cress	nucleus	34.8	24.57
Bra005688.1-P	Field mustard	nucleus	34.31	24.48
KRH49393	Soybean	nucleus	34.8	24.4
Bra000046.1-P	Field mustard	nucleus	34.8	24.15
CDY07745	Canola	nucleus	34.8	24.15
Solyc09g005560.2.1	Tomato	nucleus	34.31	23.89
PGSC0003DMT400077751	Potato	nucleus	34.8	23.83
Os05t0128000-00	Rice	nucleus	38.73	23.72
KRH65719	Soybean	cytosol	30.88	23.08
HORVU1Hr1G014950.2	Barley	mitochondrion	39.71	22.95
KRH75965	Soybean	nucleus	30.39	22.79
Zm00001d035457_P001	Maize	nucleus	36.76	22.39
CDY10496	Canola	nucleus	34.31	22.08
CDY11203	Canola	nucleus	34.31	21.94
CDX80775	Canola	nucleus	34.31	21.94
CDY04841	Canola	nucleus	32.35	21.29
AT5G01380.1	Thale cress	nucleus	32.35	20.43
GSMUA_Achr7P04840_001	Banana	nucleus	29.9	20.07
Bra028899.1-P	Field mustard	nucleus	23.53	19.59
GSMUA_AchrUn_...	Banana	nucleus	20.1	18.64
OQU77323	Sorghum	nucleus	38.73	18.54
GSMUA_Achr5P17240_001	Banana	nucleus	16.67	15.6
GSMUA_Achr3P19370_001	Banana	nucleus	22.06	12.26
GSMUA_Achr5P17230_001	Banana	cytosol	6.37	6.31

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G21100_001	EnsemblPlants:GSMUA_Achr8P21100_001	EnsemblPlants:GSMUA_Achr8T21100_001	InterPro:IPR017877	UniProt:M0TSB3
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:SANT/Myb	SMART:SM00717
InterPro:Trihelix_TF_GT3	UniParc:UPI0002965198	SEG:seg	:	:	:

Description

Putative Zinc finger and SCAN domain-containing protein 29 [Source:GMGC_GENE;Acc:GSMUA_Achr8G21100_001]

Coordinates

chr8:+:26094928..26096103

Molecular Weight (calculated)

24012.5 Da

IEP (calculated)

5.483

GRAVY (calculated)

-0.694

Length

204 amino acids

Sequence
(BLAST)

001: MDLHRQRLNP YAQVNPPPES VERFPQWTHD ETRELLAIRA QLDRSFTETK RNKPLWEATS SMLQQKGFFR TPDQCKSKWK NLVTRFKGIE SAEGEIGKQF
101: PFYEEMRRIF ADRMERLLVF EKDKGKGVQV RVKEWEEEAE EEEEEEEEEG KAEESLSSFC RCFAYHQGLV SVAPAKVTEA CKCFFWLLPL CHLLFRLSLA
201: SSPI

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.