CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00261	Soybean	nucleus	83.51	83.22
KRH65719	Soybean	cytosol	67.7	72.16
KRH75965	Soybean	nucleus	66.67	71.32
VIT_08s0105g00400.t01	Wine grape	nucleus	63.57	66.79
Solyc09g005560.2.1	Tomato	nucleus	64.95	64.51
PGSC0003DMT400077751	Potato	nucleus	65.29	63.76
AT2G38250.1	Thale cress	nucleus	52.23	52.6
Bra005127.1-P	Field mustard	nucleus	50.52	50.34
Bra000046.1-P	Field mustard	nucleus	50.86	50.34
CDX74901	Canola	nucleus	50.86	50.17
CDY14474	Canola	nucleus	50.17	50.0
CDY07745	Canola	nucleus	50.52	50.0
CDX91438	Canola	nucleus	49.48	49.32
Bra005688.1-P	Field mustard	nucleus	46.05	46.85
AT5G01380.1	Thale cress	nucleus	51.89	46.75
CDY10496	Canola	nucleus	50.17	46.06
CDY11203	Canola	nucleus	49.14	44.83
CDX80775	Canola	nucleus	48.11	43.89
Bra028899.1-P	Field mustard	nucleus	36.77	43.67
CDY04841	Canola	nucleus	45.7	42.9
KRH76406	Soybean	nucleus	43.99	41.56
GSMUA_Achr8P21100_001	Banana	nucleus	24.4	34.8
TraesCS1D01G072600.1	Wheat	nucleus	37.8	34.48
TraesCS1B01G088500.1	Wheat	nucleus	36.77	33.23
Os05t0128000-00	Rice	nucleus	37.46	32.73
Zm00001d035457_P001	Maize	nucleus	36.08	31.34
HORVU1Hr1G014950.2	Barley	mitochondrion	36.77	30.31
OQU77323	Sorghum	nucleus	37.11	25.35
KRH31419	Soybean	nucleus	17.87	13.9
KRG97471	Soybean	nucleus	17.87	13.83

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100778195	MapMan:15.5.20	EMBL:ACUP02004359	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G151100
GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
UniProt:I1KKF8	InterPro:IPR017877	EnsemblPlants:KRH49393	ProteinID:KRH49393	ProteinID:KRH49393.1	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI00023C7113	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:18302557..18304238

Molecular Weight (calculated)

35080.4 Da

IEP (calculated)

7.591

GRAVY (calculated)

-1.367

Length

291 amino acids

Sequence
(BLAST)

001: MEGHHLHHHH RQQQQQHHHQ QQHQQQQHHH HPHHNITTSN VDATDRFPQW SIQETKEFLM IRAELDQTFM DTKRNKQLWE VISTRMKEKG FHKSAEQCKC
101: KWKNLVTRYK GCETMEPEAT RQQFPFYNEL QAIFAARMQR MLWAEAEGGS NKKKVHLSSE DEEEGNEETS EGDHKGNITS KKKKKGKMVI GGGGSGNNNL
201: ESLKEIMDEF MRQQMQMEAQ WMEAFEAREN ERRLKEMEWR QTMEALENER LMMDQRWRER EEQRRIREEV RADKRDALIT ALLNKLRREE M

Best Arabidopsis Sequence Match ( AT3G25990.1 )
(BLAST)

001: MFVSDNNNPS RDINMMIGDV TSNGDLQPHQ IILGESSGGE DHEIIKAPKK RAETWAQDET RTLISLRREM DNLFNTSKSN KHLWEQISKK MREKGFDRSP
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR

Arabidopsis Description

GT-4Trihelix transcription factor GT-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.