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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 23777608
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G072600.1 Wheat nucleus 64.56 67.4
TraesCS1B01G088500.1 Wheat nucleus 64.86 67.08
Zm00001d035457_P001 Maize nucleus 57.66 57.31
HORVU1Hr1G014950.2 Barley mitochondrion 58.26 54.96
OQU77323 Sorghum nucleus 62.46 48.83
GSMUA_Achr8P21100_001 Banana nucleus 23.72 38.73
VIT_08s0105g00400.t01 Wine grape nucleus 31.83 38.27
KRH65719 Soybean cytosol 31.23 38.1
KRH00261 Soybean nucleus 33.33 38.01
KRH49393 Soybean nucleus 32.73 37.46
AT2G38250.1 Thale cress nucleus 32.43 37.37
KRH75965 Soybean nucleus 30.33 37.13
CDY14474 Canola nucleus 32.43 36.99
CDY07745 Canola nucleus 32.13 36.39
Bra000046.1-P Field mustard nucleus 32.13 36.39
Bra005127.1-P Field mustard nucleus 31.83 36.3
CDX91438 Canola nucleus 31.53 35.96
Solyc09g005560.2.1 Tomato nucleus 31.23 35.49
CDX74901 Canola nucleus 30.93 34.92
Bra028899.1-P Field mustard nucleus 24.92 33.88
Bra005688.1-P Field mustard nucleus 28.83 33.57
CDY10496 Canola nucleus 31.83 33.44
PGSC0003DMT400077751 Potato nucleus 29.73 33.22
AT5G01380.1 Thale cress nucleus 31.83 32.82
CDY11203 Canola nucleus 30.63 31.97
CDX80775 Canola nucleus 30.63 31.97
CDY04841 Canola nucleus 29.73 31.94
Os04t0602300-01 Rice cytosol, nucleus 17.72 29.06
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.20EntrezGene:4337690ProteinID:BAF16449.1ProteinID:BAS92084.1ProteinID:EEE62197.1
GO:GO:0000981GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355
GO:GO:0006357GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565
InterPro:IPR017877InterPro:Myb-like_domEnsemblPlantsGene:Os05g0128000EnsemblPlants:Os05t0128000-00PFAM:PF13837PFscan:PS50090
PANTHER:PTHR45378UniProt:Q0DL24InterPro:Trihelix_TF_GT3UniParc:UPI0000E12325RefSeq:XP_015637590.1RefSeq:XP_015637591.1
SEG:seg:::::
Description
Homeodomain-like containing protein. (Os05t0128000-00)
Coordinates
chr5:+:1643484..1644746
Molecular Weight (calculated)
36948.8 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.936
Length
333 amino acids
Sequence
(BLAST)
001: MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPPP PLLPADPPSL ERERLPQWSH AETAAFLAIR ADLDHSFLST KRNKALWEAA SARLHALGFA
101: RTPDQCKSKW KNLVTRFKGT EGAAAVAAAG TDQMQGGQGG GAAARGSSSS FPFHDELRRI FDARVERARA LERKKVKGKD PDDDHDGGGD GDEDDEEEAD
201: QQVDEEDDGA SGDTTRAGSK KRRRKAAAAA RRTGSTGGVE GEVEAMLREF MRRQIEMEER WMEAAEAREA ERRAREEEWR TAMVALGEER LALVRRWRER
301: EDAWRARAEE REERRHQLVA ALLAKLGAGD ASA
Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)
001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
Arabidopsis Description
GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.