Factsheet for Bra005688.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11203	Canola	nucleus	98.95	88.71
Bra028899.1-P	Field mustard	nucleus	59.09	68.98
AT5G01380.1	Thale cress	nucleus	70.28	62.23
VIT_08s0105g00400.t01	Wine grape	nucleus	48.6	50.18
KRH65719	Soybean	cytosol	47.55	49.82
KRH75965	Soybean	nucleus	46.5	48.9
Solyc09g005560.2.1	Tomato	nucleus	48.95	47.78
KRH00261	Soybean	nucleus	48.6	47.6
PGSC0003DMT400077751	Potato	nucleus	48.95	46.98
Bra005127.1-P	Field mustard	nucleus	47.2	46.23
KRH49393	Soybean	nucleus	46.85	46.05
Bra000046.1-P	Field mustard	nucleus	46.85	45.58
GSMUA_Achr8P21100_001	Banana	nucleus	24.48	34.31
TraesCS1D01G072600.1	Wheat	nucleus	36.01	32.29
TraesCS1B01G088500.1	Wheat	nucleus	36.01	31.99
Zm00001d035457_P001	Maize	nucleus	34.27	29.25
Os05t0128000-00	Rice	nucleus	33.57	28.83
HORVU1Hr1G014950.2	Barley	mitochondrion	35.31	28.61
OQU77323	Sorghum	nucleus	34.62	23.24
Bra036354.1-P	Field mustard	nucleus	17.83	12.91
Bra026903.1-P	Field mustard	nucleus	17.48	12.44
Bra019721.1-P	Field mustard	nucleus	16.43	11.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EnsemblPlantsGene:Bra005688	EnsemblPlants:Bra005688.1	EnsemblPlants:Bra005688.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	UniProt:M4CNA0
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI000253FA28
SEG:seg	:	:	:	:	:

Description

AT5G01380 (E=3e-103) | transcription factor

Coordinates

chrA03:+:132015..133666

Molecular Weight (calculated)

33805.4 Da

IEP (calculated)

5.451

GRAVY (calculated)

-1.250

Length

286 amino acids

Sequence
(BLAST)

001: MDSGGGGGER IPQWSIEETK ELLGIREELD QTFMETKRNK LLWEVVAAKM ADKGFARSAE QCKSKWKNLV TRYKACETTE PEASRQQFPF YSEIQSIFTA
101: RMQRNLWSEP TEGSTSSKRK HHQFSSDEEE EDQVEEPNQD INEELLSFIE TDKKEAEVIT TSTSTDPRKR VKKGKGIFTG STKAETAGST LKEILEDFMR
201: QTVKMEKEWI ASWEMKERER EKREHERRRR MADLEEERAA AERRWMERED ERRLREEARA RKRDTLIDAL LNKLNRDHND DHYQGF

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.