Factsheet for Bra028899.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04841	Canola	nucleus	82.04	64.84
Bra005688.1-P	Field mustard	nucleus	68.98	59.09
AT5G01380.1	Thale cress	nucleus	61.22	46.44
KRH65719	Soybean	cytosol	44.49	39.93
VIT_08s0105g00400.t01	Wine grape	nucleus	44.9	39.71
Bra005127.1-P	Field mustard	nucleus	46.12	38.7
KRH75965	Soybean	nucleus	42.45	38.24
Solyc09g005560.2.1	Tomato	nucleus	45.71	38.23
PGSC0003DMT400077751	Potato	nucleus	45.71	37.58
KRH00261	Soybean	nucleus	44.08	36.99
KRH49393	Soybean	nucleus	43.67	36.77
Bra000046.1-P	Field mustard	nucleus	44.08	36.73
Os05t0128000-00	Rice	nucleus	33.88	24.92
TraesCS1D01G072600.1	Wheat	nucleus	32.24	24.76
TraesCS1B01G088500.1	Wheat	nucleus	31.43	23.91
Zm00001d035457_P001	Maize	nucleus	32.65	23.88
GSMUA_Achr8P21100_001	Banana	nucleus	19.59	23.53
HORVU1Hr1G014950.2	Barley	mitochondrion	31.84	22.1
OQU77323	Sorghum	nucleus	32.24	18.54
Bra036354.1-P	Field mustard	nucleus	17.14	10.63
Bra019721.1-P	Field mustard	nucleus	17.14	10.5
Bra026903.1-P	Field mustard	nucleus	17.14	10.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EnsemblPlantsGene:Bra028899	EnsemblPlants:Bra028899.1	EnsemblPlants:Bra028899.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:M4EJD3	PFAM:PF13837
PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI0002543628	SEG:seg	:	:

Description

AT5G01380 (E=4e-071) | transcription factor

Coordinates

chrA02:+:1514513..1515967

Molecular Weight (calculated)

29420.8 Da

IEP (calculated)

9.073

GRAVY (calculated)

-1.266

Length

245 amino acids

Sequence
(BLAST)

001: METKRNKLLW EVVVAKMADK GFARSAEQCK SKWKNLVSRY KVCETTEPEP IRQQFPFYNE IQSIFTARMQ RMLWSEPRTS SKRKHNQFSS DEEVEEVAEL
101: NQDINKELLS FVETQKKDTE VITTSTFTNP KKRAKKGKGT SKAETAGSTL KEMLEDFMRQ TVKMEKEWRD AWEMKAREKE KREKEWQRRM AELEEERAAA
201: ERRWMEREDE RRLREEARAQ KRDTLIDVLL NQLNRDQDDD QHQGF

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.