CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49393	Soybean	nucleus	83.22	83.51
KRH65719	Soybean	cytosol	66.44	71.06
KRH75965	Soybean	nucleus	65.07	69.85
VIT_08s0105g00400.t01	Wine grape	nucleus	65.07	68.59
Solyc09g005560.2.1	Tomato	nucleus	63.01	62.8
PGSC0003DMT400077751	Potato	nucleus	63.7	62.42
AT2G38250.1	Thale cress	nucleus	52.05	52.6
CDY14474	Canola	nucleus	51.03	51.03
Bra005127.1-P	Field mustard	nucleus	50.68	50.68
CDX74901	Canola	nucleus	50.68	50.17
CDX91438	Canola	nucleus	50.0	50.0
Bra000046.1-P	Field mustard	nucleus	50.0	49.66
CDY07745	Canola	nucleus	49.66	49.32
Bra005688.1-P	Field mustard	nucleus	47.6	48.6
CDY11203	Canola	nucleus	48.97	44.83
CDY10496	Canola	nucleus	48.63	44.8
AT5G01380.1	Thale cress	nucleus	48.97	44.27
CDX80775	Canola	nucleus	48.29	44.2
Bra028899.1-P	Field mustard	nucleus	36.99	44.08
CDY04841	Canola	nucleus	44.52	41.94
KRH76406	Soybean	nucleus	44.18	41.88
GSMUA_Achr8P21100_001	Banana	nucleus	24.66	35.29
TraesCS1D01G072600.1	Wheat	nucleus	38.36	35.11
Os05t0128000-00	Rice	nucleus	38.01	33.33
TraesCS1B01G088500.1	Wheat	nucleus	36.64	33.23
Zm00001d035457_P001	Maize	nucleus	36.3	31.64
HORVU1Hr1G014950.2	Barley	mitochondrion	36.99	30.59
OQU77323	Sorghum	nucleus	36.3	24.88
KRH31419	Soybean	nucleus	17.12	13.37
KRG97471	Soybean	nucleus	17.12	13.3

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100794230	MapMan:15.5.20	EMBL:ACUP02011415	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G202400
GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR017877	UniProt:K7MTJ9	ProteinID:KRH00260.1	EnsemblPlants:KRH00261	ProteinID:KRH00261	ProteinID:KRH00261.1
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI000233E6C5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:48322121..48324675

Molecular Weight (calculated)

34913.4 Da

IEP (calculated)

7.421

GRAVY (calculated)

-1.214

Length

292 amino acids

Sequence
(BLAST)

001: MEGHHLHHRQ QQLQQHHHPH HNITTSNVDA TDRFPQWSIQ ETKEFLVIRA ELDQTFMETK RNKQLWEVIS NRMKEKGFHR SAEQCKCKWK NLVTRYKGCE
101: TMEPEAMRQQ FPFYNELQAI FAARMQRMLW AEAEGGSNNK KKGMHLSSDD EEEGNEEMMS EGDHKGNIII SKKNKKKGKM VIGVGGSGNN NNNSSSSSNN
201: LESLKEIMDE FMRQQMQMEA QWMEAFEARE NERRLKEMEW RQTMEALENE RLMMDQRWRE REEQRRIREE VRADKRDALI TALLNKLRRE EM

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.