CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000046.1-P	Field mustard	nucleus	98.3	98.3
CDY14474	Canola	nucleus	91.5	92.12
CDX91438	Canola	nucleus	81.97	82.53
CDX74901	Canola	nucleus	82.65	82.37
AT2G38250.1	Thale cress	nucleus	77.89	79.24
KRH75965	Soybean	nucleus	48.98	52.94
KRH65719	Soybean	cytosol	48.98	52.75
KRH49393	Soybean	nucleus	50.0	50.52
VIT_08s0105g00400.t01	Wine grape	nucleus	47.28	50.18
PGSC0003DMT400077751	Potato	nucleus	50.68	50.0
KRH00261	Soybean	nucleus	49.32	49.66
Solyc09g005560.2.1	Tomato	nucleus	48.3	48.46
CDY11203	Canola	nucleus	48.98	45.14
CDX80775	Canola	nucleus	47.96	44.2
CDY10496	Canola	nucleus	45.92	42.59
CDY04841	Canola	nucleus	44.56	42.26
GSMUA_Achr8P21100_001	Banana	nucleus	24.15	34.8
TraesCS1D01G072600.1	Wheat	nucleus	37.07	34.17
TraesCS1B01G088500.1	Wheat	nucleus	36.39	33.23
Os05t0128000-00	Rice	nucleus	36.39	32.13
Zm00001d035457_P001	Maize	nucleus	35.37	31.04
HORVU1Hr1G014950.2	Barley	mitochondrion	35.71	29.75
OQU77323	Sorghum	nucleus	37.76	26.06
CDY40984	Canola	nucleus	22.45	16.79
CDX99735	Canola	nucleus	22.45	16.54
CDY20323	Canola	cytosol	4.42	14.94
CDY26652	Canola	cytosol	19.39	14.58
CDY30031	Canola	nucleus	19.73	14.54
CDX98101	Canola	nucleus	19.73	14.54
CDY16091	Canola	nucleus	19.05	13.9
CDX97872	Canola	cytosol	3.74	12.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078F035	UniProt:A0A078F035	EnsemblPlants:CDY07745	ProteinID:CDY07745
ProteinID:CDY07745.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00124872001	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378
InterPro:SANT/Myb	SMART:SM00717	InterPro:Trihelix_TF_GT3	UniParc:UPI0004EE3000	SEG:seg	:

Description

BnaA03g17660DBnaA03g17660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F035]

Coordinates

chrLK031980:-:736448..737585

Molecular Weight (calculated)

34846.1 Da

IEP (calculated)

7.124

GRAVY (calculated)

-1.184

Length

294 amino acids

Sequence
(BLAST)

001: MDGHQHQLHH LQYLKKHSHH VHPQSQTPEI ASPATVAAGD RFPQWSLEET KELIAIRGEL DQTFMETKRN KLLWEVVSNK MRDKSFLRSP EQCKCKWKNL
101: VTRFKGCETM DAESARQQFP FYDDMDIIFT SRMQRMIWVE SEGGGGGASG TTRKRSHSEQ FSSDEEEENV NEELVDISND PKILNPKKNI GKKRKGGISN
201: SNASNSVREV LDEFMRHHMR MENEWIERWE AREKERAERE EEWRGKMEEI EKERVKMERM WRDREDQRRS REEMRAEKRD SLISALLAKL TRDG

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.