CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX96988
CDX98101
CDY16091
CDY26652
CDY30031

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	CDX98101	AT1G13450.1	21245844
AT1G13450.1	CDY16091	AT1G13450.1	21245844
AT1G13450.1	CDY26652	AT1G13450.1	21245844
AT1G13450.1	CDY30031	AT1G13450.1	21245844
AT1G13450.1	CDX69849	AT5G10270.1	12678503
AT1G13450.1	CDX96988	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019721.1-P	Field mustard	nucleus	96.99	96.75
CDY30031	Canola	nucleus	93.73	93.73
CDY26652	Canola	cytosol	80.95	82.61
CDY16091	Canola	nucleus	82.71	81.89
AT1G13450.1	Thale cress	nucleus	81.2	79.8
VIT_01s0010g02420.t01	Wine grape	nucleus	64.66	69.73
KRH31419	Soybean	nucleus	64.91	69.25
KRG97471	Soybean	nucleus	64.91	68.88
CDY40984	Canola	nucleus	63.41	64.38
CDX99735	Canola	nucleus	63.16	63.16
Solyc12g077540.1.1	Tomato	nucleus	46.37	61.46
CDX97872	Canola	cytosol	13.28	60.92
TraesCS2D01G343200.1	Wheat	nucleus	40.6	55.67
HORVU2Hr1G046270.1	Barley	cytosol	21.55	54.78
TraesCS2B01G363200.2	Wheat	nucleus	48.37	53.46
TraesCS2A01G320100.1	Wheat	nucleus	48.12	53.19
HORVU2Hr1G084030.2	Barley	cytosol	47.87	52.91
Zm00001d025720_P002	Maize	nucleus	46.87	49.34
EES11021	Sorghum	nucleus	46.87	48.95
GSMUA_Achr5P17240_001	Banana	nucleus	24.31	44.5
CDY20323	Canola	cytosol	8.52	39.08
CDX91438	Canola	nucleus	15.04	20.55
CDX74901	Canola	nucleus	14.79	20.0
CDY07745	Canola	nucleus	14.54	19.73
CDY14474	Canola	nucleus	14.29	19.52
CDY10496	Canola	nucleus	14.29	17.98
CDY04841	Canola	nucleus	13.53	17.42
CDY11203	Canola	nucleus	13.78	17.24
CDX80775	Canola	nucleus	13.78	17.24

Protein Annotations

EnsemblPlants:CDX98101	EnsemblPlantsGene:GSBRNA2T00105485001	Gene3D:1.10.10.60	GO:A0A078EAA3	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX98101	ProteinID:CDX98101.1
SEG:seg	SMART:SM00717	UniParc:UPI0004EE5B89	MapMan:15.5.20	:	:

Description

BnaA06g08520D

Coordinates

chrLK031902:-:1059095..1061214

Molecular Weight (calculated)

45902.7 Da

IEP (calculated)

7.108

GRAVY (calculated)

-0.888

Length

399 amino acids

Sequence
(BLAST)

001: MFVSDKPRPN DFYKDDTTNS STAVRNMIID GDLQPHNHHP HHNHNHHHHN HLQPQQILLG ESSGEDHEVK APKKRAETWV QDETRSLIMF RRGMDGLFNT
101: SKSNKHLWEE ISAKMREKGF DRSPTMCTDK WRNLLKEYKK AKHHDRGNVS AKMSYYKEIE DILRERSKKV TTQYSKSPNT PPIAKVDSFM QFTDKGFDDP
201: SISFGSVEGN CRPGLNLERS LDHDGHPLAI TTVDAVPANG VPPWNWRETP GNAGGDAHGQ PFGGRVITVK FGDYTRRIGV DGTAEAIKET IRSAFSLRTR
301: RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDG GVAIRVCHYD ESNQLPVHTE EKIFYTEEDY RDFLARRGWT YLQVDGFRNI DNMDDLQAGA VYRGVRERM

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.