Factsheet for VIT_01s0010g02420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02420.t01
VIT_07s0141g00280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	VIT_01s0010g02420.t01	AT1G13450.1	21245844
AT1G13450.1	VIT_07s0141g00280.t01	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31419	Soybean	nucleus	80.81	79.95
KRG97471	Soybean	nucleus	80.81	79.52
VIT_14s0171g00450.t01	Wine grape	nucleus	69.73	68.25
Solyc12g077540.1.1	Tomato	nucleus	54.59	67.11
CDY26652	Canola	cytosol	69.73	65.98
CDY30031	Canola	nucleus	70.81	65.66
Bra019721.1-P	Field mustard	nucleus	70.81	65.5
CDX98101	Canola	nucleus	69.73	64.66
AT1G13450.1	Thale cress	nucleus	70.54	64.29
Bra026903.1-P	Field mustard	nucleus	69.73	64.18
CDY16091	Canola	nucleus	69.73	64.02
HORVU2Hr1G046270.1	Barley	cytosol	25.41	59.87
TraesCS2D01G343200.1	Wheat	nucleus	45.95	58.42
TraesCS2A01G320100.1	Wheat	nucleus	55.95	57.34
TraesCS2B01G363200.2	Wheat	nucleus	55.95	57.34
HORVU2Hr1G084030.2	Barley	cytosol	55.41	56.79
EES11021	Sorghum	nucleus	52.97	51.31
Zm00001d025720_P002	Maize	nucleus	52.43	51.19
VIT_17s0000g10420.t01	Wine grape	nucleus	45.14	48.83
GSMUA_Achr5P17240_001	Banana	nucleus	27.03	45.87
VIT_02s0087g00140.t01	Wine grape	nucleus	14.86	17.35
VIT_08s0105g00400.t01	Wine grape	nucleus	12.97	17.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100249383	wikigene:100249383	MapMan:15.5.20	EMBL:AM488489	ProteinID:CAN73236
ProteinID:CAN73236.1	ProteinID:CCB51235	ProteinID:CCB51235.1	UniProt:F6HG42	EMBL:FN595754	GO:GO:0000981
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042802	GO:GO:0043565
InterPro:IPR017877	EntrezGene:LOC100249383	wikigene:LOC100249383	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090
PANTHER:PTHR45169	InterPro:SANT/Myb	SMART:SM00717	UniParc:UPI00015CB868	ArrayExpress:VIT_01s0010g02420	EnsemblPlantsGene:VIT_01s0010g02420
EnsemblPlants:VIT_01s0010g02420.t01	unigene:Vvi.17739	RefSeq:XP_002270945	RefSeq:XP_002270945.2	RefSeq:XP_002270945.3	:

Description

No Description!

Coordinates

chr1:+:19500101..19509376

Molecular Weight (calculated)

42652.0 Da

IEP (calculated)

6.158

GRAVY (calculated)

-0.926

Length

370 amino acids

Sequence
(BLAST)

001: MYLPEKPRPL DFYKEEEEGR DMMIEVVSNG GLPHQQQQMI LGDSSGEDHE PKAPKKRAET WVQDETRSLI AFRRDMDCLF NTSKSNKHLW EQISAKMREK
101: GFDRSPTMCT DKWRNLLKEF KKAKHQDRGS GSAKMSYYKE IEEILKERSK NAHYKSPTMS KVDPFIQFSD KGIDDTSIPF GPVEASGRPT LNLERQLDHD
201: GHPLAITSAD AVTANGVPPW NWRETPGSGG ESQSYGGRVI SVKWGDYTRR IGIDGTADAI KEAIKSAFRL RTKRGFWLED EDQIIRTLDR DMPLGSYSLH
301: LDEGIGIKVC HYDESEHIPV HTEEKTFYTE EDFRDFLTRR GWSSLRELNG YRNIDNMDDL RPDSLYRGMS

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.