Factsheet for VIT_17s0000g10420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G046270.1	Barley	cytosol	21.64	47.13
VIT_01s0010g02420.t01	Wine grape	nucleus	48.83	45.14
VIT_14s0171g00450.t01	Wine grape	nucleus	49.42	44.71
Solyc12g077540.1.1	Tomato	nucleus	37.13	42.19
TraesCS2D01G343200.1	Wheat	nucleus	35.09	41.24
TraesCS2B01G363200.2	Wheat	nucleus	42.11	39.89
TraesCS2A01G320100.1	Wheat	nucleus	41.81	39.61
HORVU2Hr1G084030.2	Barley	cytosol	41.23	39.06
Zm00001d025720_P002	Maize	nucleus	41.81	37.73
EES11021	Sorghum	nucleus	41.81	37.43
GSMUA_Achr5P17240_001	Banana	nucleus	21.34	33.49
VIT_02s0087g00140.t01	Wine grape	nucleus	16.37	17.67
VIT_08s0105g00400.t01	Wine grape	nucleus	14.04	17.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100265024	wikigene:100265024	MapMan:15.5.20	ProteinID:CBI14857	ProteinID:CBI14857.3
UniProt:D7SH98	EMBL:FN594950	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017877	EntrezGene:LOC100265024	wikigene:LOC100265024	InterPro:Myb-like_dom	PFAM:PF13837
PFscan:PS50090	PANTHER:PTHR45169	SUPFAM:SSF46689	UniParc:UPI0001BE0BB3	ArrayExpress:VIT_17s0000g10420	EnsemblPlantsGene:VIT_17s0000g10420
EnsemblPlants:VIT_17s0000g10420.t01	unigene:Vvi.20693	RefSeq:XP_003634231	RefSeq:XP_003634231.1	RefSeq:XP_010663030.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:12796621..12806173

Molecular Weight (calculated)

40062.1 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.859

Length

342 amino acids

Sequence
(BLAST)

001: MPRPMSFFVE EDEDMLMDAD GNNVEHVPQH DPHRHHPQRQ HLQQILLTES SGEDIEIKVP RRRAETWVHD ETHSLIAFRR ELDEFFNTSK SNKHLWEQIA
101: ARMSELGYDR TAAMCTDKWR NLLKDYKKAQ QRDGGSGKMY YEELEEFYAE KKRNDPYRKI TSSRAPFMHI SEKDGRKARF NSEKVMDYDQ HSLGISEAEV
201: VAANGLPPWN RKETPGSGTE NESAYTGRVI WVNYGECTKR IGIDGSSDSI KEAIRSSFGL RTNRAFWLED ENEIVRSLDR DMPLTTYTLC LDAGLTIKIC
301: LYDQPCQLLP VRTEEKTFYC EDDLRDFLHH RGWMGLRRFK LL

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.