Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G046270.1 | |
| HORVU2Hr1G084030.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13450.1 | HORVU2Hr1G046270.1 | AT1G13450.1 | 21245844 |
| AT1G13450.1 | HORVU2Hr1G084030.2 | AT1G13450.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P17230_001 | Banana | cytosol | 64.97 | 49.51 |
| CDX97872 | Canola | cytosol | 23.57 | 42.53 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 91.08 | 39.61 |
| CDY20323 | Canola | cytosol | 19.75 | 35.63 |
| EES11021 | Sorghum | nucleus | 74.52 | 30.63 |
| Zm00001d025720_P002 | Maize | nucleus | 73.89 | 30.61 |
| GSMUA_Achr3P19370_001 | Banana | nucleus | 70.7 | 30.25 |
| VIT_14s0171g00450.t01 | Wine grape | nucleus | 62.42 | 25.93 |
| VIT_01s0010g02420.t01 | Wine grape | nucleus | 59.87 | 25.41 |
| KRH31419 | Soybean | nucleus | 56.69 | 23.8 |
| KRG97471 | Soybean | nucleus | 56.69 | 23.67 |
| CDY40984 | Canola | nucleus | 56.69 | 22.65 |
| AT3G25990.1 | Thale cress | cytosol | 53.5 | 22.58 |
| Bra036354.1-P | Field mustard | nucleus | 56.05 | 22.28 |
| CDX99735 | Canola | nucleus | 55.41 | 21.8 |
| CDY30031 | Canola | nucleus | 55.41 | 21.8 |
| CDY26652 | Canola | cytosol | 54.14 | 21.74 |
| VIT_17s0000g10420.t01 | Wine grape | nucleus | 47.13 | 21.64 |
| CDX98101 | Canola | nucleus | 54.78 | 21.55 |
| Bra019721.1-P | Field mustard | nucleus | 54.78 | 21.5 |
| CDY16091 | Canola | nucleus | 54.14 | 21.09 |
| Bra026903.1-P | Field mustard | nucleus | 53.5 | 20.9 |
| Solyc12g077540.1.1 | Tomato | nucleus | 38.85 | 20.27 |
| AT1G13450.1 | Thale cress | nucleus | 51.59 | 19.95 |
| HORVU2Hr1G101600.2 | Barley | nucleus | 9.55 | 5.58 |
| HORVU1Hr1G014950.2 | Barley | mitochondrion | 9.55 | 4.25 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 3.82 | 2.75 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G046270.1 | EnsemblPlantsGene:HORVU2Hr1G046270 | PANTHER:PTHR45169 | UniParc:UPI000B476A36 | UniProt:A0A287HWE9 | MapMan:15.5.20 |
Description
No Description!
Coordinates
chrchr2H:-:246071926..246073314
Molecular Weight (calculated)
17928.1 Da
IEP (calculated)
5.342
GRAVY (calculated)
-0.555
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: CRLKTNGGNT SGDNHGTYGG RVILVKWGDY TKRIGIDGTA EAIKEAIKSA FGLRTRRAFW LEDEDEVVRS LDRDMPVGIY ALHLDNGITI KLCTFEDADR
101: MTVRTEDKTF YTEDDFRDFL SRRGWTLLRE YSGYRVADTL DDLRPGAIYQ GMRSLVD
101: MTVRTEDKTF YTEDDFRDFL SRRGWTLLRE YSGYRVADTL DDLRPGAIYQ GMRSLVD
001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
Arabidopsis Description
GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.