Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- peroxisome 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G046270.1 | Barley | cytosol | 49.51 | 64.97 |
| GSMUA_Achr3P19370_001 | Banana | nucleus | 75.24 | 42.23 |
| TraesCS2B01G363200.2 | Wheat | nucleus | 61.65 | 35.18 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 61.16 | 34.9 |
| TraesCS2A01G320100.1 | Wheat | nucleus | 60.68 | 34.63 |
| VIT_14s0171g00450.t01 | Wine grape | nucleus | 62.62 | 34.13 |
| EES11021 | Sorghum | nucleus | 59.71 | 32.2 |
| Zm00001d025720_P002 | Maize | nucleus | 58.74 | 31.93 |
| TraesCS2D01G343200.1 | Wheat | nucleus | 39.81 | 28.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 10.19 | 9.55 |
| GSMUA_Achr7P04840_001 | Banana | nucleus | 12.14 | 8.22 |
| GSMUA_Achr8P21100_001 | Banana | nucleus | 6.31 | 6.37 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 5.34 | 5.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P17230_001 | EnsemblPlants:GSMUA_Achr5T17230_001 | EnsemblPlantsGene:GSMUA_Achr5G17230_001 | PANTHER:PTHR45169 | UniParc:UPI000294C3DB | UniProt:M0SZA2 |
| MapMan:15.5.20 | : | : | : | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G17230_001]
Coordinates
chr5:-:16218676..16232636
Molecular Weight (calculated)
23541.6 Da
IEP (calculated)
4.979
GRAVY (calculated)
-0.479
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLYFADFF HYDLNSFSNG RSPLNMDRPL EHDRHPLAIT AAEAVAASGV NPWSWRDPSV NDNNASYDGR VILVKWGDYS RRIGIDGTAE AIKEAIKSAF
101: GLRTKRAFWL EDDENVIRSL DRDMPLGSYT LHLDEGISIK VCIYEETDRI AVHTEEKTLY TEDDFRDFLS HRGWAGLREL SSFKNVVTLD DLRPGAMYQG
201: MKLLSD
101: GLRTKRAFWL EDDENVIRSL DRDMPLGSYT LHLDEGISIK VCIYEETDRI AVHTEEKTLY TEDDFRDFLS HRGWAGLREL SSFKNVVTLD DLRPGAMYQG
201: MKLLSD
001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
Arabidopsis Description
GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.