Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G436000.1 | Wheat | nucleus | 28.18 | 62.0 |
| Os04t0602300-01 | Rice | cytosol, nucleus | 50.91 | 55.17 |
| EES12791 | Sorghum | nucleus | 59.55 | 48.34 |
| TraesCS2B01G457200.1 | Wheat | nucleus | 57.27 | 46.84 |
| HORVU2Hr1G101600.2 | Barley | nucleus | 57.27 | 46.84 |
| TraesCS2D01G433900.1 | Wheat | nucleus | 57.27 | 46.15 |
| GSMUA_Achr7P04840_001 | Banana | nucleus | 63.18 | 45.72 |
| Zm00001d026245_P001 | Maize | nucleus | 55.0 | 45.49 |
| Zm00001d002424_P002 | Maize | nucleus | 55.91 | 45.05 |
| KRH76406 | Soybean | nucleus | 61.82 | 44.16 |
| VIT_02s0087g00140.t01 | Wine grape | nucleus | 62.73 | 43.53 |
| PGSC0003DMT400011408 | Potato | nucleus | 48.18 | 33.12 |
| Solyc08g005900.2.1 | Tomato | nucleus | 48.18 | 32.52 |
| GSMUA_Achr8P21100_001 | Banana | nucleus | 18.64 | 20.1 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 10.45 | 10.55 |
| GSMUA_Achr5P17230_001 | Banana | cytosol | 9.55 | 10.19 |
| GSMUA_Achr3P19370_001 | Banana | nucleus | 16.36 | 9.81 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP04340_001 | EnsemblPlants:GSMUA_AchrUn_randomT04340_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG04340_001 | Gene3D:1.10.10.60 | ncoils:Coil | PANTHER:PTHR45227 |
| PFAM:PF13837 | SEG:seg | UniParc:UPI000295D89E | UniProt:M0U696 | MapMan:15.5.20 | : |
Description
transcription factor TF2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04340_001]
Coordinates
chrchrUn_random:+:18087185..18088629
Molecular Weight (calculated)
26283.8 Da
IEP (calculated)
6.803
GRAVY (calculated)
-1.425
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MRERGYRRTP DQCKCKWKNL VNRYKGKETA DPETGRQCPF FDELNAVFVE RAKNMQRLLL ESESGASQSK KKPKRVGRDR SSDEISDDDD EDDNDSDDEL
101: LPKGRRKKAD HRGGHQQHRG KAAAAAAAAG SIQELLQEFL QQQQQMEMQW FDMMERRAQE RRMFEQEWRQ SMEKLERERL MLEQAWRERE EQRRMREESR
201: AEKRDALLTT LLNKFIEDDL
101: LPKGRRKKAD HRGGHQQHRG KAAAAAAAAG SIQELLQEFL QQQQQMEMQW FDMMERRAQE RRMFEQEWRQ SMEKLERERL MLEQAWRERE EQRRMREESR
201: AEKRDALLTT LLNKFIEDDL
001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
Arabidopsis Description
GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.