CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G436000.1	Wheat	nucleus	20.13	62.0
GSMUA_AchrUn_...	Banana	nucleus	44.16	61.82
EES12791	Sorghum	nucleus	50.97	57.93
Zm00001d026245_P001	Maize	nucleus	49.03	56.77
TraesCS2B01G457200.1	Wheat	nucleus	49.35	56.51
VIT_02s0087g00140.t01	Wine grape	nucleus	58.12	56.47
Os04t0602300-01	Rice	cytosol, nucleus	37.01	56.16
TraesCS2D01G433900.1	Wheat	nucleus	49.35	55.68
Zm00001d002424_P002	Maize	nucleus	48.38	54.58
HORVU2Hr1G101600.2	Barley	nucleus	47.4	54.28
GSMUA_Achr7P04840_001	Banana	nucleus	52.6	53.29
PGSC0003DMT400011408	Potato	nucleus	50.65	48.75
Solyc08g005900.2.1	Tomato	nucleus	48.38	45.71
KRH75965	Soybean	nucleus	39.61	44.85
KRH00261	Soybean	nucleus	41.88	44.18
KRH49393	Soybean	nucleus	41.56	43.99
KRH65719	Soybean	cytosol	38.31	43.22
KRH31419	Soybean	nucleus	18.83	15.51
KRG97471	Soybean	nucleus	18.83	15.43

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100812635	MapMan:15.5.20	EMBL:ACUP02000611	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G150500
GO:GO:0000981	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017877	UniProt:K7K3Z3	EnsemblPlants:KRH76406	ProteinID:KRH76406	ProteinID:KRH76406.1
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45227	InterPro:SANT/Myb	SMART:SM00717
UniParc:UPI00023372B6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:48750937..48753389

Molecular Weight (calculated)

36077.4 Da

IEP (calculated)

8.484

GRAVY (calculated)

-1.183

Length

308 amino acids

Sequence
(BLAST)

001: MFGGGGEDAL AARLGMMPPS LLNPASVMSG EMSPAVPAAR EERGPAQPQW SQQETREFIA IRAELERDFT ASKRNKTLWE VVSAKMRERG FRRSPEQCKC
101: KWKNLVNRYK GKETSDPEHG KQCPFFEELH AVFTQRAHNM QRLLLESETR SAQTKKGVKR SSGDRSSEEL SEDDNEVEYD SEEEKPSRSN TRKRKVDKVG
201: VEKSSRASNP SNSASNSTSI QEMLKEFFQH QLSMEMQWRE MMERRAHERQ LFEQEWRQSM EKLERERLMI EQAWREREEQ RRMREESRAE RRDALLTTLL
301: NKLINESN

Best Arabidopsis Sequence Match ( AT1G13450.2 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGKSSEKA YINLSLKV

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.