CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75965	Soybean	nucleus	87.55	87.87
KRH49393	Soybean	nucleus	72.16	67.7
KRH00261	Soybean	nucleus	71.06	66.44
VIT_08s0105g00400.t01	Wine grape	nucleus	64.1	63.18
Solyc09g005560.2.1	Tomato	nucleus	63.37	59.04
PGSC0003DMT400077751	Potato	nucleus	63.37	58.05
AT2G38250.1	Thale cress	nucleus	55.31	52.25
Bra005127.1-P	Field mustard	nucleus	52.75	49.32
Bra000046.1-P	Field mustard	nucleus	52.75	48.98
CDY07745	Canola	nucleus	52.75	48.98
CDX74901	Canola	nucleus	52.01	48.14
CDY14474	Canola	nucleus	51.28	47.95
CDX91438	Canola	nucleus	51.28	47.95
Bra005688.1-P	Field mustard	nucleus	49.82	47.55
CDY11203	Canola	nucleus	52.01	44.51
Bra028899.1-P	Field mustard	nucleus	39.93	44.49
CDX80775	Canola	nucleus	50.92	43.57
AT5G01380.1	Thale cress	nucleus	51.28	43.34
CDY10496	Canola	nucleus	50.18	43.22
CDY04841	Canola	nucleus	47.99	42.26
KRH76406	Soybean	nucleus	43.22	38.31
TraesCS1D01G072600.1	Wheat	nucleus	38.46	32.92
TraesCS1B01G088500.1	Wheat	nucleus	37.73	31.99
Os05t0128000-00	Rice	nucleus	38.1	31.23
GSMUA_Achr8P21100_001	Banana	nucleus	23.08	30.88
Zm00001d035457_P001	Maize	nucleus	36.63	29.85
HORVU1Hr1G014950.2	Barley	mitochondrion	38.46	29.75
OQU77323	Sorghum	nucleus	38.83	24.88
KRH31419	Soybean	nucleus	17.95	13.1
KRG97471	Soybean	nucleus	17.95	13.03

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100818384	MapMan:15.5.20	EMBL:ACUP02001470	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G056900
GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR017877	UniProt:K7KD37	ProteinID:KRH65717.1	ProteinID:KRH65718.1	EnsemblPlants:KRH65719	ProteinID:KRH65719
ProteinID:KRH65719.1	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3
UniParc:UPI00023BC364	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:7845697..7858329

Molecular Weight (calculated)

32661.0 Da

IEP (calculated)

9.391

GRAVY (calculated)

-1.099

Length

273 amino acids

Sequence
(BLAST)

001: MEGTHHLRHL HQQQQQKQRV LPQSMSSVNV DVTDRFPQWS IQETKEFLVI RAELDQTFME TKRNKQLWEV ISNRMKEKGY HRSAEQCKCK WKNLVTRYKG
101: FETMEQEATR QQFPFYNEFN AIFTARMQRM LWAEAGGGSK KNKAMTMQLS SDEEDGKEES TEAGSDRKKK KAKIVSGGGG SLNNLKEILE DFMRQQMQIE
201: AQWMVAFEAR ENERRLKEME WRQAMEVLEN ERIMMEERWR EREEQRRIRE EARAEKRDAL ITALLNKLER QGM

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.