Factsheet for Zm00001d035457_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G072600.1	Wheat	nucleus	57.01	59.87
HORVU1Hr1G014950.2	Barley	mitochondrion	62.99	59.77
TraesCS1B01G088500.1	Wheat	nucleus	57.01	59.32
Os05t0128000-00	Rice	nucleus	57.31	57.66
OQU77323	Sorghum	nucleus	61.49	48.36
KRH75965	Soybean	nucleus	30.15	37.13
GSMUA_Achr8P21100_001	Banana	nucleus	22.39	36.76
KRH65719	Soybean	cytosol	29.85	36.63
VIT_08s0105g00400.t01	Wine grape	nucleus	30.15	36.46
CDY14474	Canola	nucleus	31.64	36.3
KRH00261	Soybean	nucleus	31.64	36.3
KRH49393	Soybean	nucleus	31.34	36.08
AT2G38250.1	Thale cress	nucleus	30.75	35.64
CDY07745	Canola	nucleus	31.04	35.37
Bra000046.1-P	Field mustard	nucleus	31.04	35.37
CDX91438	Canola	nucleus	30.75	35.27
Bra005127.1-P	Field mustard	nucleus	30.75	35.27
Solyc09g005560.2.1	Tomato	nucleus	30.45	34.81
Bra005688.1-P	Field mustard	nucleus	29.25	34.27
CDX74901	Canola	nucleus	30.15	34.24
PGSC0003DMT400077751	Potato	nucleus	30.15	33.89
CDY10496	Canola	nucleus	31.64	33.44
Bra028899.1-P	Field mustard	nucleus	23.88	32.65
CDX80775	Canola	nucleus	30.45	31.97
CDY11203	Canola	nucleus	30.15	31.66
AT5G01380.1	Thale cress	nucleus	30.45	31.58
Zm00001d026245_P001	Maize	nucleus	24.18	30.45
Zm00001d002424_P002	Maize	nucleus	24.18	29.67
CDY04841	Canola	nucleus	27.16	29.35
Zm00001d025720_P002	Maize	nucleus	17.91	15.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	UniProt:A0A1D6LGG1	ProteinID:AQK79005.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837
PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI00022112B6	EnsemblPlantsGene:Zm00001d035457	EnsemblPlants:Zm00001d035457_P001
EnsemblPlants:Zm00001d035457_T001	SEG:seg	:	:	:	:

Description

Trihelix-transcription factor 5Trihelix transcription factor GT-3b

Coordinates

chr6:-:27101237..27102244

Molecular Weight (calculated)

36764.6 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.805

Length

335 amino acids

Sequence
(BLAST)

001: MDPFHHLNSS FSNPYHPLLS PSPPHFPLPP PPPQLPSVSA ASSASLERER LPQWSHAETA AFLAVRADLD HSFLTTKRNK ALWEAVSARL HAQGFARTPD
101: QCKSKWKNLV TRFKGTEAAA AAAAADPASA QQQQPRPQFP FHDEVRRIFD ARAERAQALE RKRAKGKGVR TAAAAALDDE GAGEGDDAAD VDDDEEDEDE
201: EAAAGDEEAG GGLPAAADAG GRAGAKKRRR KQARAAAARA AAGQGEVEAM LREFMRRQAE MEERWAEAAE AREAERRARE EEWRAAMVAL GEERLALVRR
301: WREREDALRA RAEEREERRH QLVAALLAKL GGADC

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.