Factsheet for PGSC0003DMT400077751

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005560.2.1	Tomato	nucleus	84.9	86.35
KRH49393	Soybean	nucleus	63.76	65.29
VIT_08s0105g00400.t01	Wine grape	nucleus	59.73	64.26
KRH00261	Soybean	nucleus	62.42	63.7
KRH65719	Soybean	cytosol	58.05	63.37
KRH75965	Soybean	nucleus	56.71	62.13
AT2G38250.1	Thale cress	nucleus	53.36	55.02
Bra005127.1-P	Field mustard	nucleus	51.34	52.4
CDX74901	Canola	nucleus	51.01	51.53
CDX91438	Canola	nucleus	49.66	50.68
CDY14474	Canola	nucleus	49.66	50.68
CDY07745	Canola	nucleus	50.0	50.68
Bra000046.1-P	Field mustard	nucleus	50.0	50.68
Bra005688.1-P	Field mustard	nucleus	46.98	48.95
CDY11203	Canola	nucleus	51.01	47.65
CDY10496	Canola	nucleus	50.34	47.32
CDX80775	Canola	nucleus	50.34	47.02
Bra028899.1-P	Field mustard	nucleus	37.58	45.71
CDY04841	Canola	nucleus	47.32	45.48
AT5G01380.1	Thale cress	nucleus	48.66	44.89
PGSC0003DMT400011408	Potato	nucleus	39.26	36.56
GSMUA_Achr8P21100_001	Banana	nucleus	23.83	34.8
TraesCS1D01G072600.1	Wheat	nucleus	33.89	31.66
TraesCS1B01G088500.1	Wheat	nucleus	33.22	30.75
Zm00001d035457_P001	Maize	nucleus	33.89	30.15
Os05t0128000-00	Rice	nucleus	33.22	29.73
HORVU1Hr1G014950.2	Barley	mitochondrion	33.22	28.05
OQU77323	Sorghum	nucleus	33.56	23.47

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102591120	MapMan:15.5.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	UniProt:M1CYV5	InterPro:Myb-like_dom	PFAM:PF13837
EnsemblPlantsGene:PGSC0003DMG400030246	PGSC:PGSC0003DMG400030246	EnsemblPlants:PGSC0003DMT400077751	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3
UniParc:UPI000295C326	RefSeq:XP_006367516.1	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030246]

Coordinates

chr9:+:8020032..8021976

Molecular Weight (calculated)

34974.5 Da

IEP (calculated)

7.719

GRAVY (calculated)

-1.129

Length

298 amino acids

Sequence
(BLAST)

001: MDPHLHHHQH QHHLQQQQQQ QHQFSHQSVN IDTTSGGVNI GGGGDRFPQW SIQETRDFLM IRAELDQTFM ETKRNKLLWE VIATKMKEKG YNRSPEQCKC
101: KWKNLVTRYK GCETLEPEAL RQQFPFYNEL QAIFAARMQR MLWIEAEGGG GGGGGASGSK KKSISSDEEE ENDDSDGEKV GKKKRKVKGN MIVGSSSGGN
201: NNNLVSSLKE ILDDFMKQQM VMEMQWLKAY EAKEEERRIK EMEWRQTMEA LENERLMMET RWREREEQRR MREEARAEKR DALITTLLNK LRREDHNM

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.