Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g005900.2.1 | Tomato | nucleus | 76.56 | 75.15 |
| TraesCS2A01G436000.1 | Wheat | nucleus | 17.19 | 55.0 |
| KRH76406 | Soybean | nucleus | 48.75 | 50.65 |
| TraesCS2B01G457200.1 | Wheat | nucleus | 41.88 | 49.81 |
| TraesCS2D01G433900.1 | Wheat | nucleus | 41.88 | 49.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.12 | 48.18 |
| EES12791 | Sorghum | nucleus | 40.62 | 47.97 |
| Zm00001d026245_P001 | Maize | nucleus | 39.38 | 47.37 |
| VIT_02s0087g00140.t01 | Wine grape | nucleus | 46.88 | 47.32 |
| Zm00001d002424_P002 | Maize | nucleus | 39.38 | 46.15 |
| HORVU2Hr1G101600.2 | Barley | nucleus | 38.44 | 45.72 |
| GSMUA_Achr7P04840_001 | Banana | nucleus | 41.88 | 44.08 |
| Os04t0602300-01 | Rice | cytosol, nucleus | 27.19 | 42.86 |
| PGSC0003DMT400077751 | Potato | nucleus | 36.56 | 39.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011408 | EnsemblPlantsGene:PGSC0003DMG400004470 | EntrezGene:102589994 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | PANTHER:PTHR45227 | PFAM:PF13837 | PFscan:PS50090 | PGSC:PGSC0003DMG400004470 | RefSeq:XP_006367770.1 |
| SEG:seg | SMART:SM00717 | UniParc:UPI000295F87A | UniProt:M0ZZI8 | MapMan:15.5.20 | : |
Description
Transcription factor TF2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004470]
Coordinates
chr8:+:2906974..2916176
Molecular Weight (calculated)
37378.6 Da
IEP (calculated)
9.535
GRAVY (calculated)
-1.220
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGGNNENLG PFTQRLMLPQ HPLHLLPGAG GSSGSGLGGD DEFPKRDERV PPWSNQETRD FIAIRGELEI EFSSAKRSNL KNLWEIVAAR INERGYRRSA
101: EQCKSKWKTL INRYKGKETS DPDNGGQFPY FDELHALFSS NMNNNVQRVQ LESEARKRPR GTSRDRSSEE ISEDEGYAYE SDEVKLARSN VAPKKKTEKV
201: KRPRTSNAEK ASRQANFGSI NNNTGRAVDN IQEMLKEFFQ HQLRIEMQWR ETTEKRARER EVFEQEWRSS MEKLERDRMM IEQSWREREE QRRTREETRA
301: EKRDALLTTL LNKLIGENHP
101: EQCKSKWKTL INRYKGKETS DPDNGGQFPY FDELHALFSS NMNNNVQRVQ LESEARKRPR GTSRDRSSEE ISEDEGYAYE SDEVKLARSN VAPKKKTEKV
201: KRPRTSNAEK ASRQANFGSI NNNTGRAVDN IQEMLKEFFQ HQLRIEMQWR ETTEKRARER EVFEQEWRSS MEKLERDRMM IEQSWREREE QRRTREETRA
301: EKRDALLTTL LNKLIGENHP
001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF
Arabidopsis Description
GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.