Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12791 | Sorghum | nucleus | 92.31 | 92.99 |
| Zm00001d026245_P001 | Maize | nucleus | 84.62 | 86.84 |
| Os04t0602300-01 | Rice | cytosol, nucleus | 55.31 | 74.38 |
| TraesCS2B01G457200.1 | Wheat | nucleus | 71.06 | 72.12 |
| TraesCS2D01G433900.1 | Wheat | nucleus | 71.06 | 71.06 |
| TraesCS2A01G436000.1 | Wheat | nucleus | 26.01 | 71.0 |
| HORVU2Hr1G101600.2 | Barley | nucleus | 68.86 | 69.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.05 | 55.91 |
| GSMUA_Achr7P04840_001 | Banana | nucleus | 54.95 | 49.34 |
| KRH76406 | Soybean | nucleus | 54.58 | 48.38 |
| VIT_02s0087g00140.t01 | Wine grape | nucleus | 50.92 | 43.85 |
| PGSC0003DMT400011408 | Potato | nucleus | 46.15 | 39.38 |
| Solyc08g005900.2.1 | Tomato | nucleus | 45.05 | 37.73 |
| Zm00001d035457_P001 | Maize | nucleus | 29.67 | 24.18 |
| Zm00001d025720_P002 | Maize | nucleus | 17.22 | 12.4 |
Protein Annotations
| EMBL:EU963154 | EnsemblPlants:Zm00001d002424_P002 | EnsemblPlants:Zm00001d002424_T002 | EnsemblPlantsGene:Zm00001d002424 | EntrezGene:100283016 | Gene3D:1.10.10.60 |
| InterPro:IPR017877 | InterPro:Myb-like_dom | PANTHER:PTHR45227 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:ONM14282.1 |
| SEG:seg | UniParc:UPI000182C53D | UniProt:B6TDT9 | MapMan:15.5.20 | : | : |
Description
Trihelix-transcription factor 23Transcription factor GT-3b
Coordinates
chr2:+:12400464..12403506
Molecular Weight (calculated)
32313.2 Da
IEP (calculated)
8.490
GRAVY (calculated)
-1.259
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEAGGAGAG AGGRDERVPQ WGAQETRELI MARGEMERET VAARRSAKTM WEAVAARLRE RGYRRTAEQC KCKWKNLVNR YKGKETSDPE NGRQCPFFEE
101: LHGVFTERAR NMQQQLLESE SGVSVKTKLK RPGGDWSSRE SDDKEDDGEE SDDEKPMHNR KRKADDKKQQ HQRMSEKSRT GISSIHELLQ DFLVQQQHID
201: VRWREMIERR AQERVVFEQQ WRLTMQRLEQ ERLLLEHSWM EREERRRMKE EARAEKRDAL LTTLLNKLLQ EDL
101: LHGVFTERAR NMQQQLLESE SGVSVKTKLK RPGGDWSSRE SDDKEDDGEE SDDEKPMHNR KRKADDKKQQ HQRMSEKSRT GISSIHELLQ DFLVQQQHID
201: VRWREMIERR AQERVVFEQQ WRLTMQRLEQ ERLLLEHSWM EREERRRMKE EARAEKRDAL LTTLLNKLLQ EDL
001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
Arabidopsis Description
GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.